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Cluster: Rep_960_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_960_c_173 Rep_960_c_173_36 45190 46413 + GT4
pfam Rep_960_c_173 Rep_960_c_173_37 46417 47853 + NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
pfam Rep_960_c_173 Rep_960_c_173_38 48047 49417 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
TC Rep_960_c_173 Rep_960_c_173_39 49472 50866 + 9.B.18.1.1
TC Rep_960_c_173 Rep_960_c_173_40 50876 52354 + 2.A.66.2.7
pfam Rep_960_c_173 Rep_960_c_173_41 52390 53670 + PS_pyruv_trans
CAZyme Rep_960_c_173 Rep_960_c_173_42 53667 54887 + GT4
NULL(UNKNOWN) Rep_960_c_173 Rep_960_c_173_43 54899 56302 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_960_c_173 Rep_960_c_173_44 56480 57376 + NTP_transferase
TC Rep_960_c_173 Rep_960_c_173_45 57758 59011 + 2.A.66.12.4
pfam Rep_960_c_173 Rep_960_c_173_46 59016 61364 + Radical_SAM | PS_pyruv_trans
CAZyme Rep_960_c_173 Rep_960_c_173_47 61369 62586 + GT4
NULL(UNKNOWN) Rep_960_c_173 Rep_960_c_173_48 62549 63769 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_960_c_173 Rep_960_c_173_49 63747 64496 + GT2
Gene ID: Rep_960_c_173_36
Type: CAZyme
Location: 45190 - 46413 (+)
Gene ID: Rep_960_c_173_37
Type: pfam
Location: 46417 - 47853 (+)
Gene ID: Rep_960_c_173_38
Type: pfam
Location: 48047 - 49417 (+)
Gene ID: Rep_960_c_173_39
Type: TC
Location: 49472 - 50866 (+)
Gene ID: Rep_960_c_173_40
Type: TC
Location: 50876 - 52354 (+)
Gene ID: Rep_960_c_173_41
Type: pfam
Location: 52390 - 53670 (+)
Gene ID: Rep_960_c_173_42
Type: CAZyme
Location: 53667 - 54887 (+)
Gene ID: Rep_960_c_173_43
Type:
Location: 54899 - 56302 (+)
Gene ID: Rep_960_c_173_44
Type: pfam
Location: 56480 - 57376 (+)
Gene ID: Rep_960_c_173_45
Type: TC
Location: 57758 - 59011 (+)
Gene ID: Rep_960_c_173_46
Type: pfam
Location: 59016 - 61364 (+)
Gene ID: Rep_960_c_173_47
Type: CAZyme
Location: 61369 - 62586 (+)
Gene ID: Rep_960_c_173_48
Type:
Location: 62549 - 63769 (+)
Gene ID: Rep_960_c_173_49
Type: CAZyme
Location: 63747 - 64496 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_960_c_173_44 omnivore > vegetarian 2.61397 0.03523

🧭 Explore Read Mapping of CGC

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