Cluster: Rep_960_CGC47
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_173 | Rep_960_c_173_13 | 12770 | 14182 | - | 2.A.1.3.26 |
| TC | Rep_960_c_173 | Rep_960_c_173_14 | 14179 | 17259 | - | 2.A.6.2.12 |
| TC | Rep_960_c_173 | Rep_960_c_173_15 | 17260 | 20382 | - | 2.A.6.2.12 |
| TC | Rep_960_c_173 | Rep_960_c_173_16 | 20382 | 21626 | - | 8.A.1.6.2 |
| pfam | Rep_960_c_173 | Rep_960_c_173_17 | 22063 | 23430 | - | HSP70 | HSP70 | MreB_Mbl |
| STP | Rep_960_c_173 | Rep_960_c_173_18 | 23552 | 24421 | + | AlkA_N | HhH-GPD |
| TC | Rep_960_c_173 | Rep_960_c_173_19 | 24389 | 27718 | - | 9.B.34.1.1 |
| pfam | Rep_960_c_173 | Rep_960_c_173_20 | 28045 | 28686 | + | PRK |
| pfam | Rep_960_c_173 | Rep_960_c_173_21 | 28778 | 29359 | + | DCD_N | DCD |
| TC | Rep_960_c_173 | Rep_960_c_173_22 | 29381 | 31234 | + | 9.B.22.2.1 |
| TC | Rep_960_c_173 | Rep_960_c_173_23 | 31345 | 32928 | - | 2.A.109.2.3 |
| TC | Rep_960_c_173 | Rep_960_c_173_24 | 33605 | 34741 | + | 1.B.18.3.1 |
| pfam | Rep_960_c_173 | Rep_960_c_173_25 | 34747 | 35193 | + | LMWPc |
| TC | Rep_960_c_173 | Rep_960_c_173_26 | 35193 | 37355 | + | 8.A.3.3.2 |
| CAZyme | Rep_960_c_173 | Rep_960_c_173_27 | 37413 | 38255 | + | GT2 |
| pfam | Rep_960_c_173 | Rep_960_c_173_28 | 38258 | 38746 | + | Hexapep |
| CAZyme | Rep_960_c_173 | Rep_960_c_173_29 | 38743 | 39960 | + | GT4 |
| NULL(UNKNOWN) | Rep_960_c_173 | Rep_960_c_173_30 | 39935 | 41155 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_960_c_173 | Rep_960_c_173_31 | 41169 | 41915 | + | GT2 |
Gene ID: Rep_960_c_173_13
Type: TC
Location: 12770 - 14182 (-)
Type: TC
Location: 12770 - 14182 (-)
Gene ID: Rep_960_c_173_14
Type: TC
Location: 14179 - 17259 (-)
Type: TC
Location: 14179 - 17259 (-)
Gene ID: Rep_960_c_173_15
Type: TC
Location: 17260 - 20382 (-)
Type: TC
Location: 17260 - 20382 (-)
Gene ID: Rep_960_c_173_16
Type: TC
Location: 20382 - 21626 (-)
Type: TC
Location: 20382 - 21626 (-)
Gene ID: Rep_960_c_173_17
Type: pfam
Location: 22063 - 23430 (-)
Type: pfam
Location: 22063 - 23430 (-)
Gene ID: Rep_960_c_173_18
Type: STP
Location: 23552 - 24421 (+)
Type: STP
Location: 23552 - 24421 (+)
Gene ID: Rep_960_c_173_19
Type: TC
Location: 24389 - 27718 (-)
Type: TC
Location: 24389 - 27718 (-)
Gene ID: Rep_960_c_173_20
Type: pfam
Location: 28045 - 28686 (+)
Type: pfam
Location: 28045 - 28686 (+)
Gene ID: Rep_960_c_173_21
Type: pfam
Location: 28778 - 29359 (+)
Type: pfam
Location: 28778 - 29359 (+)
Gene ID: Rep_960_c_173_22
Type: TC
Location: 29381 - 31234 (+)
Type: TC
Location: 29381 - 31234 (+)
Gene ID: Rep_960_c_173_23
Type: TC
Location: 31345 - 32928 (-)
Type: TC
Location: 31345 - 32928 (-)
Gene ID: Rep_960_c_173_24
Type: TC
Location: 33605 - 34741 (+)
Type: TC
Location: 33605 - 34741 (+)
Gene ID: Rep_960_c_173_25
Type: pfam
Location: 34747 - 35193 (+)
Type: pfam
Location: 34747 - 35193 (+)
Gene ID: Rep_960_c_173_26
Type: TC
Location: 35193 - 37355 (+)
Type: TC
Location: 35193 - 37355 (+)
Gene ID: Rep_960_c_173_27
Type: CAZyme
Location: 37413 - 38255 (+)
Type: CAZyme
Location: 37413 - 38255 (+)
Gene ID: Rep_960_c_173_28
Type: pfam
Location: 38258 - 38746 (+)
Type: pfam
Location: 38258 - 38746 (+)
Gene ID: Rep_960_c_173_29
Type: CAZyme
Location: 38743 - 39960 (+)
Type: CAZyme
Location: 38743 - 39960 (+)
Gene ID: Rep_960_c_173_30
Type:
Location: 39935 - 41155 (+)
Type:
Location: 39935 - 41155 (+)
Gene ID: Rep_960_c_173_31
Type: CAZyme
Location: 41169 - 41915 (+)
Type: CAZyme
Location: 41169 - 41915 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.