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Cluster: Rep_957_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_957_c_1 Rep_957_c_1_66 71971 72699 + GT51
pfam Rep_957_c_1 Rep_957_c_1_67 72696 73328 - YrbL-PhoP_reg
TC Rep_957_c_1 Rep_957_c_1_68 73546 73818 - 8.A.8.1.5
pfam Rep_957_c_1 Rep_957_c_1_69 73815 74669 - RapZ-like_N | PapZ_C
TC Rep_957_c_1 Rep_957_c_1_70 74715 75206 - 4.A.2.1.7
pfam Rep_957_c_1 Rep_957_c_1_71 75324 75611 - Ribosomal_S30AE
pfam Rep_957_c_1 Rep_957_c_1_72 75634 77067 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC Rep_957_c_1 Rep_957_c_1_73 77115 77840 - 1.B.42.1.2
TC Rep_957_c_1 Rep_957_c_1_74 77847 78404 - 1.B.42.1.2
TC Rep_957_c_1 Rep_957_c_1_75 78373 78948 - 1.B.42.1.2
pfam Rep_957_c_1 Rep_957_c_1_76 78945 79511 - Hydrolase_3
STP Rep_957_c_1 Rep_957_c_1_77 79532 80518 - CBS | CBS | SIS
TC Rep_957_c_1 Rep_957_c_1_78 80532 81509 - 2.A.19.5.1
TC Rep_957_c_1 Rep_957_c_1_79 81719 82528 + 3.A.1.27.3
TC Rep_957_c_1 Rep_957_c_1_80 82536 83318 + 3.A.1.27.3
TC Rep_957_c_1 Rep_957_c_1_81 83323 83874 + 3.A.1.27.3
TC Rep_957_c_1 Rep_957_c_1_82 83893 84528 + 3.A.1.27.3
TC Rep_957_c_1 Rep_957_c_1_83 84528 84821 + 3.A.1.27.3
Gene ID: Rep_957_c_1_66
Type: CAZyme
Location: 71971 - 72699 (+)
Gene ID: Rep_957_c_1_67
Type: pfam
Location: 72696 - 73328 (-)
Gene ID: Rep_957_c_1_68
Type: TC
Location: 73546 - 73818 (-)
Gene ID: Rep_957_c_1_69
Type: pfam
Location: 73815 - 74669 (-)
Gene ID: Rep_957_c_1_70
Type: TC
Location: 74715 - 75206 (-)
Gene ID: Rep_957_c_1_71
Type: pfam
Location: 75324 - 75611 (-)
Gene ID: Rep_957_c_1_72
Type: pfam
Location: 75634 - 77067 (-)
Gene ID: Rep_957_c_1_73
Type: TC
Location: 77115 - 77840 (-)
Gene ID: Rep_957_c_1_74
Type: TC
Location: 77847 - 78404 (-)
Gene ID: Rep_957_c_1_75
Type: TC
Location: 78373 - 78948 (-)
Gene ID: Rep_957_c_1_76
Type: pfam
Location: 78945 - 79511 (-)
Gene ID: Rep_957_c_1_77
Type: STP
Location: 79532 - 80518 (-)
Gene ID: Rep_957_c_1_78
Type: TC
Location: 80532 - 81509 (-)
Gene ID: Rep_957_c_1_79
Type: TC
Location: 81719 - 82528 (+)
Gene ID: Rep_957_c_1_80
Type: TC
Location: 82536 - 83318 (+)
Gene ID: Rep_957_c_1_81
Type: TC
Location: 83323 - 83874 (+)
Gene ID: Rep_957_c_1_82
Type: TC
Location: 83893 - 84528 (+)
Gene ID: Rep_957_c_1_83
Type: TC
Location: 84528 - 84821 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_957_c_1_66 omnivore > vegetarian 1.29476 0.03449
Rep_957_c_1_83 omnivore > vegetarian 2.30955 0.03111

🧭 Explore Read Mapping of CGC

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