Cluster: Rep_957_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_957
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_957_c_0 | Rep_957_c_0_371 | 374645 | 375391 | - | GT2 |
| NULL(UNKNOWN) | Rep_957_c_0 | Rep_957_c_0_372 | 375517 | 376737 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_957_c_0 | Rep_957_c_0_373 | 376712 | 377929 | - | GT4 |
| pfam | Rep_957_c_0 | Rep_957_c_0_374 | 377926 | 378414 | - | Hexapep |
| CAZyme | Rep_957_c_0 | Rep_957_c_0_375 | 378417 | 379256 | - | GT2 |
| TC | Rep_957_c_0 | Rep_957_c_0_376 | 379363 | 381525 | - | 8.A.3.3.2 |
| pfam | Rep_957_c_0 | Rep_957_c_0_377 | 381528 | 381971 | - | LMWPc |
| TC | Rep_957_c_0 | Rep_957_c_0_378 | 381977 | 383116 | - | 1.B.18.3.1 |
| TC | Rep_957_c_0 | Rep_957_c_0_379 | 383786 | 385369 | + | 2.A.109.2.3 |
| TC | Rep_957_c_0 | Rep_957_c_0_380 | 385829 | 387682 | - | 9.B.22.2.1 |
| pfam | Rep_957_c_0 | Rep_957_c_0_381 | 387704 | 388285 | - | DCD_N | DCD |
| pfam | Rep_957_c_0 | Rep_957_c_0_382 | 388377 | 389018 | - | PRK |
| TC | Rep_957_c_0 | Rep_957_c_0_383 | 389337 | 392654 | + | 9.B.34.1.1 |
Gene ID: Rep_957_c_0_371
Type: CAZyme
Location: 374645 - 375391 (-)
Type: CAZyme
Location: 374645 - 375391 (-)
Gene ID: Rep_957_c_0_372
Type:
Location: 375517 - 376737 (-)
Type:
Location: 375517 - 376737 (-)
Gene ID: Rep_957_c_0_373
Type: CAZyme
Location: 376712 - 377929 (-)
Type: CAZyme
Location: 376712 - 377929 (-)
Gene ID: Rep_957_c_0_374
Type: pfam
Location: 377926 - 378414 (-)
Type: pfam
Location: 377926 - 378414 (-)
Gene ID: Rep_957_c_0_375
Type: CAZyme
Location: 378417 - 379256 (-)
Type: CAZyme
Location: 378417 - 379256 (-)
Gene ID: Rep_957_c_0_376
Type: TC
Location: 379363 - 381525 (-)
Type: TC
Location: 379363 - 381525 (-)
Gene ID: Rep_957_c_0_377
Type: pfam
Location: 381528 - 381971 (-)
Type: pfam
Location: 381528 - 381971 (-)
Gene ID: Rep_957_c_0_378
Type: TC
Location: 381977 - 383116 (-)
Type: TC
Location: 381977 - 383116 (-)
Gene ID: Rep_957_c_0_379
Type: TC
Location: 383786 - 385369 (+)
Type: TC
Location: 383786 - 385369 (+)
Gene ID: Rep_957_c_0_380
Type: TC
Location: 385829 - 387682 (-)
Type: TC
Location: 385829 - 387682 (-)
Gene ID: Rep_957_c_0_381
Type: pfam
Location: 387704 - 388285 (-)
Type: pfam
Location: 387704 - 388285 (-)
Gene ID: Rep_957_c_0_382
Type: pfam
Location: 388377 - 389018 (-)
Type: pfam
Location: 388377 - 389018 (-)
Gene ID: Rep_957_c_0_383
Type: TC
Location: 389337 - 392654 (+)
Type: TC
Location: 389337 - 392654 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_0_371 | omnivore > vegetarian | 1.73530 | 0.03449 |
| Rep_957_c_0_380 | omnivore > vegetarian | 1.86445 | 0.03111 |
| Rep_957_c_0_383 | omnivore > vegetarian | 1.02398 | 0.03920 |