Cluster: Rep_957_CGC44
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_957
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_957_c_16 | Rep_957_c_16_15 | 13819 | 14205 | - | 2.A.7.22.1 |
| TC | Rep_957_c_16 | Rep_957_c_16_16 | 14205 | 14540 | - | 2.A.7.22.1 |
| CAZyme | Rep_957_c_16 | Rep_957_c_16_17 | 14537 | 16189 | - | GT83 |
| pfam | Rep_957_c_16 | Rep_957_c_16_18 | 16186 | 17079 | - | Polysacc_deac_1 |
| pfam | Rep_957_c_16 | Rep_957_c_16_19 | 17082 | 19058 | - | Formyl_trans_N | 3Beta_HSD | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| CAZyme | Rep_957_c_16 | Rep_957_c_16_20 | 19058 | 20026 | - | GT2 |
Gene ID: Rep_957_c_16_15
Type: TC
Location: 13819 - 14205 (-)
Type: TC
Location: 13819 - 14205 (-)
Gene ID: Rep_957_c_16_16
Type: TC
Location: 14205 - 14540 (-)
Type: TC
Location: 14205 - 14540 (-)
Gene ID: Rep_957_c_16_17
Type: CAZyme
Location: 14537 - 16189 (-)
Type: CAZyme
Location: 14537 - 16189 (-)
Gene ID: Rep_957_c_16_18
Type: pfam
Location: 16186 - 17079 (-)
Type: pfam
Location: 16186 - 17079 (-)
Gene ID: Rep_957_c_16_19
Type: pfam
Location: 17082 - 19058 (-)
Type: pfam
Location: 17082 - 19058 (-)
Gene ID: Rep_957_c_16_20
Type: CAZyme
Location: 19058 - 20026 (-)
Type: CAZyme
Location: 19058 - 20026 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_16_19 | omnivore > vegetarian | 1.28860 | 0.03395 |