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Cluster: Rep_957_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_957_c_15 Rep_957_c_15_16 11781 13100 + 2.A.1.4.4
TC Rep_957_c_15 Rep_957_c_15_17 13238 14629 + 2.A.1.4.1
peptidase Rep_957_c_15 Rep_957_c_15_18 14672 16438 - M38.UNW
TC Rep_957_c_15 Rep_957_c_15_19 16613 17947 + 2.A.40.7.4
pfam Rep_957_c_15 Rep_957_c_15_20 18000 18452 + DUF1198
TC Rep_957_c_15 Rep_957_c_15_21 18672 19862 + 2.A.1.2.26
NULL(UNKNOWN) Rep_957_c_15 Rep_957_c_15_22 19904 20197 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_957_c_15 Rep_957_c_15_23 20418 21236 + 3.A.1.24.1
TC Rep_957_c_15 Rep_957_c_15_24 21262 22164 - 2.A.7.3.12
NULL(UNKNOWN) Rep_957_c_15 Rep_957_c_15_25 22366 23580 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_957_c_15 Rep_957_c_15_26 24247 25629 + 2.A.2.3.4
CAZyme Rep_957_c_15 Rep_957_c_15_27 25639 27957 + GH31_3
pfam Rep_957_c_15 Rep_957_c_15_28 28009 29718 - AsmA
TC Rep_957_c_15 Rep_957_c_15_29 29839 31230 - 2.A.40.4.2
TC Rep_957_c_15 Rep_957_c_15_30 31509 32714 + 2.A.27.1.1
Gene ID: Rep_957_c_15_16
Type: TC
Location: 11781 - 13100 (+)
Gene ID: Rep_957_c_15_17
Type: TC
Location: 13238 - 14629 (+)
Gene ID: Rep_957_c_15_18
Type: peptidase
Location: 14672 - 16438 (-)
Gene ID: Rep_957_c_15_19
Type: TC
Location: 16613 - 17947 (+)
Gene ID: Rep_957_c_15_20
Type: pfam
Location: 18000 - 18452 (+)
Gene ID: Rep_957_c_15_21
Type: TC
Location: 18672 - 19862 (+)
Gene ID: Rep_957_c_15_22
Type:
Location: 19904 - 20197 (-)
Gene ID: Rep_957_c_15_23
Type: TC
Location: 20418 - 21236 (+)
Gene ID: Rep_957_c_15_24
Type: TC
Location: 21262 - 22164 (-)
Gene ID: Rep_957_c_15_25
Type:
Location: 22366 - 23580 (+)
Gene ID: Rep_957_c_15_26
Type: TC
Location: 24247 - 25629 (+)
Gene ID: Rep_957_c_15_27
Type: CAZyme
Location: 25639 - 27957 (+)
Gene ID: Rep_957_c_15_28
Type: pfam
Location: 28009 - 29718 (-)
Gene ID: Rep_957_c_15_29
Type: TC
Location: 29839 - 31230 (-)
Gene ID: Rep_957_c_15_30
Type: TC
Location: 31509 - 32714 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_957_c_15_18 omnivore > vegetarian 1.45347 0.03395
Rep_957_c_15_19 omnivore > vegetarian 1.95490 0.03111
Rep_957_c_15_20 omnivore > vegetarian 1.72995 0.03395
Rep_957_c_15_21 omnivore > vegetarian 1.75523 0.03111
Rep_957_c_15_24 omnivore > vegetarian 1.57331 0.04949
Rep_957_c_15_28 omnivore > vegetarian 1.26171 0.03395

🧭 Explore Read Mapping of CGC

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