Cluster: Rep_957_CGC31
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_957
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_957_c_9 | Rep_957_c_9_74 | 89139 | 91193 | - | GH42 |
| TF | Rep_957_c_9 | Rep_957_c_9_75 | 91427 | 92509 | + | LacI |
| TC | Rep_957_c_9 | Rep_957_c_9_76 | 92764 | 93999 | + | 2.A.1.5.4 |
| pfam | Rep_957_c_9 | Rep_957_c_9_77 | 94127 | 95452 | + | UPF0004 | Radical_SAM | TRAM_2 |
| TC | Rep_957_c_9 | Rep_957_c_9_78 | 95499 | 96827 | - | 9.B.34.1.1 |
| STP | Rep_957_c_9 | Rep_957_c_9_79 | 96835 | 99183 | - | EAL | dCache_1 |
| TC | Rep_957_c_9 | Rep_957_c_9_80 | 99361 | 100272 | - | 3.A.1.5.11 |
| TC | Rep_957_c_9 | Rep_957_c_9_81 | 100275 | 101195 | - | 3.A.1.5.11 |
| TC | Rep_957_c_9 | Rep_957_c_9_82 | 101213 | 102751 | - | 3.A.1.5.11 |
| TC | Rep_957_c_9 | Rep_957_c_9_83 | 102771 | 104642 | - | 3.A.1.5.11 |
| peptidase | Rep_957_c_9 | Rep_957_c_9_84 | 104629 | 105594 | - | T02.UPW |
| pfam | Rep_957_c_9 | Rep_957_c_9_85 | 105799 | 107034 | + | MoCF_biosynth | MoeA_N | MoeA_C |
| TC | Rep_957_c_9 | Rep_957_c_9_86 | 107034 | 107783 | + | 3.A.25.2.1 |
Gene ID: Rep_957_c_9_74
Type: CAZyme
Location: 89139 - 91193 (-)
Type: CAZyme
Location: 89139 - 91193 (-)
Gene ID: Rep_957_c_9_75
Type: TF
Location: 91427 - 92509 (+)
Type: TF
Location: 91427 - 92509 (+)
Gene ID: Rep_957_c_9_76
Type: TC
Location: 92764 - 93999 (+)
Type: TC
Location: 92764 - 93999 (+)
Gene ID: Rep_957_c_9_77
Type: pfam
Location: 94127 - 95452 (+)
Type: pfam
Location: 94127 - 95452 (+)
Gene ID: Rep_957_c_9_78
Type: TC
Location: 95499 - 96827 (-)
Type: TC
Location: 95499 - 96827 (-)
Gene ID: Rep_957_c_9_79
Type: STP
Location: 96835 - 99183 (-)
Type: STP
Location: 96835 - 99183 (-)
Gene ID: Rep_957_c_9_80
Type: TC
Location: 99361 - 100272 (-)
Type: TC
Location: 99361 - 100272 (-)
Gene ID: Rep_957_c_9_81
Type: TC
Location: 100275 - 101195 (-)
Type: TC
Location: 100275 - 101195 (-)
Gene ID: Rep_957_c_9_82
Type: TC
Location: 101213 - 102751 (-)
Type: TC
Location: 101213 - 102751 (-)
Gene ID: Rep_957_c_9_83
Type: TC
Location: 102771 - 104642 (-)
Type: TC
Location: 102771 - 104642 (-)
Gene ID: Rep_957_c_9_84
Type: peptidase
Location: 104629 - 105594 (-)
Type: peptidase
Location: 104629 - 105594 (-)
Gene ID: Rep_957_c_9_85
Type: pfam
Location: 105799 - 107034 (+)
Type: pfam
Location: 105799 - 107034 (+)
Gene ID: Rep_957_c_9_86
Type: TC
Location: 107034 - 107783 (+)
Type: TC
Location: 107034 - 107783 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.