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Cluster: Rep_957_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_957_c_5 Rep_957_c_5_27 26398 26718 + 4.A.3.2.1
TC Rep_957_c_5 Rep_957_c_5_28 26799 28157 + 4.A.3.2.1
TC Rep_957_c_5 Rep_957_c_5_29 28209 28559 + 4.A.3.2.1
TF Rep_957_c_5 Rep_957_c_5_30 28570 29409 + HTH_AraC | HTH_AraC
CAZyme Rep_957_c_5 Rep_957_c_5_31 29529 30881 + GH4
Gene ID: Rep_957_c_5_27
Type: TC
Location: 26398 - 26718 (+)
Gene ID: Rep_957_c_5_28
Type: TC
Location: 26799 - 28157 (+)
Gene ID: Rep_957_c_5_29
Type: TC
Location: 28209 - 28559 (+)
Gene ID: Rep_957_c_5_30
Type: TF
Location: 28570 - 29409 (+)
Gene ID: Rep_957_c_5_31
Type: CAZyme
Location: 29529 - 30881 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_957_c_5_29 omnivore > vegetarian 1.88530 0.03395

🧭 Explore Read Mapping of CGC

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