Cluster: Rep_957_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_957
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_957_c_1 | Rep_957_c_1_176 | 179977 | 182328 | - | GH63 |
| NULL(UNKNOWN) | Rep_957_c_1 | Rep_957_c_1_177 | 182345 | 183415 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_957_c_1 | Rep_957_c_1_178 | 183556 | 184989 | - | 2.A.3.7.4 |
| pfam | Rep_957_c_1 | Rep_957_c_1_179 | 185052 | 185501 | - | DUF386 |
| CAZyme | Rep_957_c_1 | Rep_957_c_1_180 | 185498 | 188590 | - | GH2 |
Gene ID: Rep_957_c_1_176
Type: CAZyme
Location: 179977 - 182328 (-)
Type: CAZyme
Location: 179977 - 182328 (-)
Gene ID: Rep_957_c_1_177
Type:
Location: 182345 - 183415 (-)
Type:
Location: 182345 - 183415 (-)
Gene ID: Rep_957_c_1_178
Type: TC
Location: 183556 - 184989 (-)
Type: TC
Location: 183556 - 184989 (-)
Gene ID: Rep_957_c_1_179
Type: pfam
Location: 185052 - 185501 (-)
Type: pfam
Location: 185052 - 185501 (-)
Gene ID: Rep_957_c_1_180
Type: CAZyme
Location: 185498 - 188590 (-)
Type: CAZyme
Location: 185498 - 188590 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia marmotae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_957_c_1_176 | omnivore > vegetarian | 1.05780 | 0.03395 |
| Rep_957_c_1_177 | omnivore > vegetarian | 1.00821 | 0.04949 |
| Rep_957_c_1_178 | omnivore > vegetarian | 1.02574 | 0.03395 |