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Cluster: Rep_954_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_14 Rep_954_c_14_1 233 1789 - 2.A.109.2.3
NULL(UNKNOWN) Rep_954_c_14 Rep_954_c_14_2 1896 2006 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_954_c_14 Rep_954_c_14_3 2645 3760 + 1.B.18.3.1
pfam Rep_954_c_14 Rep_954_c_14_4 3760 4209 + LMWPc
TC Rep_954_c_14 Rep_954_c_14_5 4212 6371 + 8.A.3.3.2
CAZyme Rep_954_c_14 Rep_954_c_14_6 6441 7286 + GT2
pfam Rep_954_c_14 Rep_954_c_14_7 7286 7777 + Hexapep
CAZyme Rep_954_c_14 Rep_954_c_14_8 7774 8991 + GT4
NULL(UNKNOWN) Rep_954_c_14 Rep_954_c_14_9 8966 10192 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_954_c_14 Rep_954_c_14_10 10195 10953 + GT2
Gene ID: Rep_954_c_14_1
Type: TC
Location: 233 - 1789 (-)
Gene ID: Rep_954_c_14_2
Type:
Location: 1896 - 2006 (+)
Gene ID: Rep_954_c_14_3
Type: TC
Location: 2645 - 3760 (+)
Gene ID: Rep_954_c_14_4
Type: pfam
Location: 3760 - 4209 (+)
Gene ID: Rep_954_c_14_5
Type: TC
Location: 4212 - 6371 (+)
Gene ID: Rep_954_c_14_6
Type: CAZyme
Location: 6441 - 7286 (+)
Gene ID: Rep_954_c_14_7
Type: pfam
Location: 7286 - 7777 (+)
Gene ID: Rep_954_c_14_8
Type: CAZyme
Location: 7774 - 8991 (+)
Gene ID: Rep_954_c_14_9
Type:
Location: 8966 - 10192 (+)
Gene ID: Rep_954_c_14_10
Type: CAZyme
Location: 10195 - 10953 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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