Cluster: Rep_850_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_850
- CGC Family ID: CGCFAM_07756
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_850_c_4 | Rep_850_c_4_28 | 28557 | 29291 | + | 3.A.1.12.8 |
| TC | Rep_850_c_4 | Rep_850_c_4_29 | 29291 | 30814 | + | 3.A.1.12.8 |
| NULL(UNKNOWN) | Rep_850_c_4 | Rep_850_c_4_30 | 31399 | 32544 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_850_c_4 | Rep_850_c_4_31 | 32541 | 38222 | - | CBM25 | CBM41 | CBM41 | GH13_14 | GH13_32 |
Gene ID: Rep_850_c_4_28
Type: TC
Location: 28557 - 29291 (+)
Type: TC
Location: 28557 - 29291 (+)
Gene ID: Rep_850_c_4_29
Type: TC
Location: 29291 - 30814 (+)
Type: TC
Location: 29291 - 30814 (+)
Gene ID: Rep_850_c_4_30
Type:
Location: 31399 - 32544 (+)
Type:
Location: 31399 - 32544 (+)
Gene ID: Rep_850_c_4_31
Type: CAZyme
Location: 32541 - 38222 (-)
Type: CAZyme
Location: 32541 - 38222 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Scardovia
Species
Scardovia wiggsiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.