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Cluster: Rep_842_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_842_c_0 Rep_842_c_0_440 570623 571501 + 2.A.102.4.5
pfam Rep_842_c_0 Rep_842_c_0_441 571941 574058 + Alk_phosphatase | Metalloenzyme
TF Rep_842_c_0 Rep_842_c_0_442 574285 575133 - LacI
TC Rep_842_c_0 Rep_842_c_0_443 575291 576127 - 3.A.1.1.45
TC Rep_842_c_0 Rep_842_c_0_444 576124 576978 - 3.A.1.1.45
STP Rep_842_c_0 Rep_842_c_0_445 577269 578180 + Peripla_BP_3
TC Rep_842_c_0 Rep_842_c_0_446 578268 579596 - 3.A.1.1.45
CAZyme Rep_842_c_0 Rep_842_c_0_447 579912 581006 - GH172
TC Rep_842_c_0 Rep_842_c_0_448 581212 582561 - 3.A.1.1.45
Gene ID: Rep_842_c_0_440
Type: TC
Location: 570623 - 571501 (+)
Gene ID: Rep_842_c_0_441
Type: pfam
Location: 571941 - 574058 (+)
Gene ID: Rep_842_c_0_442
Type: TF
Location: 574285 - 575133 (-)
Gene ID: Rep_842_c_0_443
Type: TC
Location: 575291 - 576127 (-)
Gene ID: Rep_842_c_0_444
Type: TC
Location: 576124 - 576978 (-)
Gene ID: Rep_842_c_0_445
Type: STP
Location: 577269 - 578180 (+)
Gene ID: Rep_842_c_0_446
Type: TC
Location: 578268 - 579596 (-)
Gene ID: Rep_842_c_0_447
Type: CAZyme
Location: 579912 - 581006 (-)
Gene ID: Rep_842_c_0_448
Type: TC
Location: 581212 - 582561 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_842_c_0_443 vegetarian > vegan 1.78802 0.02157
Rep_842_c_0_445 vegetarian > vegan 1.44268 0.03182
Rep_842_c_0_447 vegetarian > vegan 1.27549 0.03164

🧭 Explore Read Mapping of CGC

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