Cluster: Rep_790_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_790
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_790_c_0 | Rep_790_c_0_449 | 477058 | 478029 | + | GH103 |
| TF | Rep_790_c_0 | Rep_790_c_0_450 | 478193 | 479140 | + | HTH_1 |
| TC | Rep_790_c_0 | Rep_790_c_0_451 | 479483 | 480688 | + | 2.A.41.2.11 |
| CAZyme | Rep_790_c_0 | Rep_790_c_0_452 | 480952 | 483492 | + | CBM73 | GH18 |
| TC | Rep_790_c_0 | Rep_790_c_0_453 | 483759 | 484853 | + | 5.A.3.4.2 |
| TC | Rep_790_c_0 | Rep_790_c_0_454 | 484876 | 487323 | + | 5.A.3.4.2 |
Gene ID: Rep_790_c_0_449
Type: CAZyme
Location: 477058 - 478029 (+)
Type: CAZyme
Location: 477058 - 478029 (+)
Gene ID: Rep_790_c_0_450
Type: TF
Location: 478193 - 479140 (+)
Type: TF
Location: 478193 - 479140 (+)
Gene ID: Rep_790_c_0_451
Type: TC
Location: 479483 - 480688 (+)
Type: TC
Location: 479483 - 480688 (+)
Gene ID: Rep_790_c_0_452
Type: CAZyme
Location: 480952 - 483492 (+)
Type: CAZyme
Location: 480952 - 483492 (+)
Gene ID: Rep_790_c_0_453
Type: TC
Location: 483759 - 484853 (+)
Type: TC
Location: 483759 - 484853 (+)
Gene ID: Rep_790_c_0_454
Type: TC
Location: 484876 - 487323 (+)
Type: TC
Location: 484876 - 487323 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.