Cluster: Rep_790_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_790
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_790_c_21 | Rep_790_c_21_31 | 28829 | 29638 | - | 3.A.1.24.1 |
| TC | Rep_790_c_21 | Rep_790_c_21_32 | 29675 | 30352 | - | 3.A.1.24.5 |
| TC | Rep_790_c_21 | Rep_790_c_21_33 | 30342 | 31376 | - | 3.A.1.24.1 |
| pfam | Rep_790_c_21 | Rep_790_c_21_34 | 31612 | 32172 | + | Hydrolase | PNK3P | Hydrolase_like | HAD_2 |
| TF | Rep_790_c_21 | Rep_790_c_21_35 | 32183 | 33187 | + | LacI |
| TC | Rep_790_c_21 | Rep_790_c_21_36 | 33436 | 34860 | + | 4.A.1.2.4 |
| CAZyme | Rep_790_c_21 | Rep_790_c_21_37 | 34940 | 36628 | + | GH13_29 |
Gene ID: Rep_790_c_21_31
Type: TC
Location: 28829 - 29638 (-)
Type: TC
Location: 28829 - 29638 (-)
Gene ID: Rep_790_c_21_32
Type: TC
Location: 29675 - 30352 (-)
Type: TC
Location: 29675 - 30352 (-)
Gene ID: Rep_790_c_21_33
Type: TC
Location: 30342 - 31376 (-)
Type: TC
Location: 30342 - 31376 (-)
Gene ID: Rep_790_c_21_34
Type: pfam
Location: 31612 - 32172 (+)
Type: pfam
Location: 31612 - 32172 (+)
Gene ID: Rep_790_c_21_35
Type: TF
Location: 32183 - 33187 (+)
Type: TF
Location: 32183 - 33187 (+)
Gene ID: Rep_790_c_21_36
Type: TC
Location: 33436 - 34860 (+)
Type: TC
Location: 33436 - 34860 (+)
Gene ID: Rep_790_c_21_37
Type: CAZyme
Location: 34940 - 36628 (+)
Type: CAZyme
Location: 34940 - 36628 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.