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Cluster: Rep_790_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_790_c_0 Rep_790_c_0_159 180416 183067 + GH20
pfam Rep_790_c_0 Rep_790_c_0_160 183204 183644 - DUF411
TC Rep_790_c_0 Rep_790_c_0_161 183653 186373 - 3.A.3.5.5
pfam Rep_790_c_0 Rep_790_c_0_162 186574 187998 + tRNA-synt_1c | Anticodon_2
TC Rep_790_c_0 Rep_790_c_0_163 188294 189259 + 1.B.6.1.11
NULL(UNKNOWN) Rep_790_c_0 Rep_790_c_0_164 189348 190046 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_790_c_0 Rep_790_c_0_165 190466 192529 + 1.B.14.8.3
pfam Rep_790_c_0 Rep_790_c_0_166 192833 193648 + SIP | FAD_binding_9
TC Rep_790_c_0 Rep_790_c_0_167 193906 201147 + 4.C.1.1.6
Gene ID: Rep_790_c_0_159
Type: CAZyme
Location: 180416 - 183067 (+)
Gene ID: Rep_790_c_0_160
Type: pfam
Location: 183204 - 183644 (-)
Gene ID: Rep_790_c_0_161
Type: TC
Location: 183653 - 186373 (-)
Gene ID: Rep_790_c_0_162
Type: pfam
Location: 186574 - 187998 (+)
Gene ID: Rep_790_c_0_163
Type: TC
Location: 188294 - 189259 (+)
Gene ID: Rep_790_c_0_164
Type:
Location: 189348 - 190046 (-)
Gene ID: Rep_790_c_0_165
Type: TC
Location: 190466 - 192529 (+)
Gene ID: Rep_790_c_0_166
Type: pfam
Location: 192833 - 193648 (+)
Gene ID: Rep_790_c_0_167
Type: TC
Location: 193906 - 201147 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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