dbCAN Logo

Cluster: Rep_790_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_790_c_9 Rep_790_c_9_1 217 2790 - 3.A.9.1.2
pfam Rep_790_c_9 Rep_790_c_9_2 2915 3637 - Cu-oxidase_4
pfam Rep_790_c_9 Rep_790_c_9_3 3640 4614 - PseudoU_synth_2 | S4
TC Rep_790_c_9 Rep_790_c_9_4 4769 5494 + 1.B.33.1.3
pfam Rep_790_c_9 Rep_790_c_9_5 5896 6222 + Ribosomal_S30AE
pfam Rep_790_c_9 Rep_790_c_9_6 6462 7637 + PDT | CM_2
TC Rep_790_c_9 Rep_790_c_9_7 7780 8859 + 3.A.1.11.7
TC Rep_790_c_9 Rep_790_c_9_8 8843 11218 + 9.B.34.1.4
pfam Rep_790_c_9 Rep_790_c_9_9 11166 11690 + NTPase_I-T
TF Rep_790_c_9 Rep_790_c_9_10 11768 12079 - Trp_repressor
CAZyme Rep_790_c_9 Rep_790_c_9_11 12134 14080 - GH23
TC Rep_790_c_9 Rep_790_c_9_12 14442 16109 + 3.A.1.120.6
Gene ID: Rep_790_c_9_1
Type: TC
Location: 217 - 2790 (-)
Gene ID: Rep_790_c_9_2
Type: pfam
Location: 2915 - 3637 (-)
Gene ID: Rep_790_c_9_3
Type: pfam
Location: 3640 - 4614 (-)
Gene ID: Rep_790_c_9_4
Type: TC
Location: 4769 - 5494 (+)
Gene ID: Rep_790_c_9_5
Type: pfam
Location: 5896 - 6222 (+)
Gene ID: Rep_790_c_9_6
Type: pfam
Location: 6462 - 7637 (+)
Gene ID: Rep_790_c_9_7
Type: TC
Location: 7780 - 8859 (+)
Gene ID: Rep_790_c_9_8
Type: TC
Location: 8843 - 11218 (+)
Gene ID: Rep_790_c_9_9
Type: pfam
Location: 11166 - 11690 (+)
Gene ID: Rep_790_c_9_10
Type: TF
Location: 11768 - 12079 (-)
Gene ID: Rep_790_c_9_11
Type: CAZyme
Location: 12134 - 14080 (-)
Gene ID: Rep_790_c_9_12
Type: TC
Location: 14442 - 16109 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List