Cluster: Rep_790_CGC16
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_790
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_790_c_5 | Rep_790_c_5_77 | 83999 | 85435 | - | GH1 |
| CAZyme | Rep_790_c_5 | Rep_790_c_5_78 | 85848 | 88022 | + | AA2 |
| TF | Rep_790_c_5 | Rep_790_c_5_79 | 88087 | 89016 | - | HTH_1 |
| pfam | Rep_790_c_5 | Rep_790_c_5_80 | 89128 | 90252 | + | Lactamase_B |
| TC | Rep_790_c_5 | Rep_790_c_5_81 | 90429 | 91562 | + | 8.A.1.2.2 |
| pfam | Rep_790_c_5 | Rep_790_c_5_82 | 91555 | 92814 | + | OEP | OEP |
| TC | Rep_790_c_5 | Rep_790_c_5_83 | 92814 | 94028 | + | 3.A.1.122.2 |
| TC | Rep_790_c_5 | Rep_790_c_5_84 | 94032 | 95309 | + | 3.A.1.122.12 |
| TC | Rep_790_c_5 | Rep_790_c_5_85 | 95309 | 96010 | + | 3.A.1.122.2 |
| pfam | Rep_790_c_5 | Rep_790_c_5_86 | 96084 | 97076 | - | Cyt_bd_oxida_II |
| TC | Rep_790_c_5 | Rep_790_c_5_87 | 97073 | 98410 | - | 3.D.4.3.2 |
| NULL(UNKNOWN) | Rep_790_c_5 | Rep_790_c_5_88 | 98933 | 99313 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_790_c_5 | Rep_790_c_5_89 | 99329 | 100714 | + | Lyase_1 | FumaraseC_C |
| TC | Rep_790_c_5 | Rep_790_c_5_90 | 100859 | 101209 | - | 2.A.7.34.1 |
Gene ID: Rep_790_c_5_77
Type: CAZyme
Location: 83999 - 85435 (-)
Type: CAZyme
Location: 83999 - 85435 (-)
Gene ID: Rep_790_c_5_78
Type: CAZyme
Location: 85848 - 88022 (+)
Type: CAZyme
Location: 85848 - 88022 (+)
Gene ID: Rep_790_c_5_79
Type: TF
Location: 88087 - 89016 (-)
Type: TF
Location: 88087 - 89016 (-)
Gene ID: Rep_790_c_5_80
Type: pfam
Location: 89128 - 90252 (+)
Type: pfam
Location: 89128 - 90252 (+)
Gene ID: Rep_790_c_5_81
Type: TC
Location: 90429 - 91562 (+)
Type: TC
Location: 90429 - 91562 (+)
Gene ID: Rep_790_c_5_82
Type: pfam
Location: 91555 - 92814 (+)
Type: pfam
Location: 91555 - 92814 (+)
Gene ID: Rep_790_c_5_83
Type: TC
Location: 92814 - 94028 (+)
Type: TC
Location: 92814 - 94028 (+)
Gene ID: Rep_790_c_5_84
Type: TC
Location: 94032 - 95309 (+)
Type: TC
Location: 94032 - 95309 (+)
Gene ID: Rep_790_c_5_85
Type: TC
Location: 95309 - 96010 (+)
Type: TC
Location: 95309 - 96010 (+)
Gene ID: Rep_790_c_5_86
Type: pfam
Location: 96084 - 97076 (-)
Type: pfam
Location: 96084 - 97076 (-)
Gene ID: Rep_790_c_5_87
Type: TC
Location: 97073 - 98410 (-)
Type: TC
Location: 97073 - 98410 (-)
Gene ID: Rep_790_c_5_88
Type:
Location: 98933 - 99313 (+)
Type:
Location: 98933 - 99313 (+)
Gene ID: Rep_790_c_5_89
Type: pfam
Location: 99329 - 100714 (+)
Type: pfam
Location: 99329 - 100714 (+)
Gene ID: Rep_790_c_5_90
Type: TC
Location: 100859 - 101209 (-)
Type: TC
Location: 100859 - 101209 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.