Cluster: Rep_790_CGC11
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_790
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_790_c_2 | Rep_790_c_2_47 | 55566 | 58115 | - | GH18 |
| pfam | Rep_790_c_2 | Rep_790_c_2_48 | 58547 | 59182 | + | DUF2057 |
| TC | Rep_790_c_2 | Rep_790_c_2_49 | 59278 | 60666 | - | 2.A.47.5.2 |
| pfam | Rep_790_c_2 | Rep_790_c_2_50 | 60980 | 61936 | + | Mem_trans |
| TC | Rep_790_c_2 | Rep_790_c_2_51 | 62067 | 63092 | + | 9.B.97.1.4 |
| pfam | Rep_790_c_2 | Rep_790_c_2_52 | 63265 | 63666 | - | MAPEG |
| NULL(UNKNOWN) | Rep_790_c_2 | Rep_790_c_2_53 | 63769 | 64497 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_790_c_2 | Rep_790_c_2_54 | 64498 | 67755 | - | 1.C.106.2.1 |
| pfam | Rep_790_c_2 | Rep_790_c_2_55 | 67752 | 68639 | - | DUF4123 |
| TC | Rep_790_c_2 | Rep_790_c_2_56 | 68639 | 70723 | - | 3.A.23.1.1 |
| pfam | Rep_790_c_2 | Rep_790_c_2_57 | 70851 | 71369 | - | T6SS_HCP |
| CAZyme | Rep_790_c_2 | Rep_790_c_2_58 | 71764 | 73953 | - | GH13_9 |
| CAZyme | Rep_790_c_2 | Rep_790_c_2_59 | 74159 | 76339 | - | GH77 |
| CAZyme | Rep_790_c_2 | Rep_790_c_2_60 | 76425 | 78878 | - | GT35 |
| TF | Rep_790_c_2 | Rep_790_c_2_61 | 79455 | 82163 | + | GerE |
| pfam | Rep_790_c_2 | Rep_790_c_2_62 | 82230 | 82586 | - | DUF2810 |
| TC | Rep_790_c_2 | Rep_790_c_2_63 | 82864 | 84525 | + | 1.B.52.2.1 |
Gene ID: Rep_790_c_2_47
Type: CAZyme
Location: 55566 - 58115 (-)
Type: CAZyme
Location: 55566 - 58115 (-)
Gene ID: Rep_790_c_2_48
Type: pfam
Location: 58547 - 59182 (+)
Type: pfam
Location: 58547 - 59182 (+)
Gene ID: Rep_790_c_2_49
Type: TC
Location: 59278 - 60666 (-)
Type: TC
Location: 59278 - 60666 (-)
Gene ID: Rep_790_c_2_50
Type: pfam
Location: 60980 - 61936 (+)
Type: pfam
Location: 60980 - 61936 (+)
Gene ID: Rep_790_c_2_51
Type: TC
Location: 62067 - 63092 (+)
Type: TC
Location: 62067 - 63092 (+)
Gene ID: Rep_790_c_2_52
Type: pfam
Location: 63265 - 63666 (-)
Type: pfam
Location: 63265 - 63666 (-)
Gene ID: Rep_790_c_2_53
Type:
Location: 63769 - 64497 (-)
Type:
Location: 63769 - 64497 (-)
Gene ID: Rep_790_c_2_54
Type: TC
Location: 64498 - 67755 (-)
Type: TC
Location: 64498 - 67755 (-)
Gene ID: Rep_790_c_2_55
Type: pfam
Location: 67752 - 68639 (-)
Type: pfam
Location: 67752 - 68639 (-)
Gene ID: Rep_790_c_2_56
Type: TC
Location: 68639 - 70723 (-)
Type: TC
Location: 68639 - 70723 (-)
Gene ID: Rep_790_c_2_57
Type: pfam
Location: 70851 - 71369 (-)
Type: pfam
Location: 70851 - 71369 (-)
Gene ID: Rep_790_c_2_58
Type: CAZyme
Location: 71764 - 73953 (-)
Type: CAZyme
Location: 71764 - 73953 (-)
Gene ID: Rep_790_c_2_59
Type: CAZyme
Location: 74159 - 76339 (-)
Type: CAZyme
Location: 74159 - 76339 (-)
Gene ID: Rep_790_c_2_60
Type: CAZyme
Location: 76425 - 78878 (-)
Type: CAZyme
Location: 76425 - 78878 (-)
Gene ID: Rep_790_c_2_61
Type: TF
Location: 79455 - 82163 (+)
Type: TF
Location: 79455 - 82163 (+)
Gene ID: Rep_790_c_2_62
Type: pfam
Location: 82230 - 82586 (-)
Type: pfam
Location: 82230 - 82586 (-)
Gene ID: Rep_790_c_2_63
Type: TC
Location: 82864 - 84525 (+)
Type: TC
Location: 82864 - 84525 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.