Cluster: Rep_769_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_769
- CGC Family ID: CGCFAM_00472
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_769_c_0 | Rep_769_c_0_1298 | 1346231 | 1348423 | + | CBM48 | GH13_9 |
| CAZyme | Rep_769_c_0 | Rep_769_c_0_1299 | 1348441 | 1350519 | + | GH13_11 |
| CAZyme | Rep_769_c_0 | Rep_769_c_0_1300 | 1350538 | 1352685 | + | GH77 |
| STP | Rep_769_c_0 | Rep_769_c_0_1301 | 1352908 | 1353525 | + | TetR_N |
| TC | Rep_769_c_0 | Rep_769_c_0_1302 | 1353528 | 1354778 | + | 2.A.6.2.47 |
| TC | Rep_769_c_0 | Rep_769_c_0_1303 | 1354782 | 1357892 | + | 2.A.6.2.2 |
Gene ID: Rep_769_c_0_1298
Type: CAZyme
Location: 1346231 - 1348423 (+)
Type: CAZyme
Location: 1346231 - 1348423 (+)
Gene ID: Rep_769_c_0_1299
Type: CAZyme
Location: 1348441 - 1350519 (+)
Type: CAZyme
Location: 1348441 - 1350519 (+)
Gene ID: Rep_769_c_0_1300
Type: CAZyme
Location: 1350538 - 1352685 (+)
Type: CAZyme
Location: 1350538 - 1352685 (+)
Gene ID: Rep_769_c_0_1301
Type: STP
Location: 1352908 - 1353525 (+)
Type: STP
Location: 1352908 - 1353525 (+)
Gene ID: Rep_769_c_0_1302
Type: TC
Location: 1353528 - 1354778 (+)
Type: TC
Location: 1353528 - 1354778 (+)
Gene ID: Rep_769_c_0_1303
Type: TC
Location: 1354782 - 1357892 (+)
Type: TC
Location: 1354782 - 1357892 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp000432275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.