Cluster: Rep_769_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_769
- CGC Family ID: CGCFAM_04502
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_769_c_0 | Rep_769_c_0_49 | 57323 | 58963 | - | 3.A.2.1.7 |
| TC | Rep_769_c_0 | Rep_769_c_0_50 | 59002 | 59916 | - | 3.A.2.1.7 |
| TC | Rep_769_c_0 | Rep_769_c_0_51 | 59927 | 61480 | - | 3.A.2.1.7 |
| pfam | Rep_769_c_0 | Rep_769_c_0_52 | 61480 | 62034 | - | OSCP |
| NULL(UNKNOWN) | Rep_769_c_0 | Rep_769_c_0_53 | 62266 | 62949 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_769_c_0 | Rep_769_c_0_54 | 63189 | 65360 | - | 3.A.11.3.1 |
| CAZyme | Rep_769_c_0 | Rep_769_c_0_55 | 65537 | 66160 | + | GT2 |
Gene ID: Rep_769_c_0_49
Type: TC
Location: 57323 - 58963 (-)
Type: TC
Location: 57323 - 58963 (-)
Gene ID: Rep_769_c_0_50
Type: TC
Location: 59002 - 59916 (-)
Type: TC
Location: 59002 - 59916 (-)
Gene ID: Rep_769_c_0_51
Type: TC
Location: 59927 - 61480 (-)
Type: TC
Location: 59927 - 61480 (-)
Gene ID: Rep_769_c_0_52
Type: pfam
Location: 61480 - 62034 (-)
Type: pfam
Location: 61480 - 62034 (-)
Gene ID: Rep_769_c_0_53
Type:
Location: 62266 - 62949 (-)
Type:
Location: 62266 - 62949 (-)
Gene ID: Rep_769_c_0_54
Type: TC
Location: 63189 - 65360 (-)
Type: TC
Location: 63189 - 65360 (-)
Gene ID: Rep_769_c_0_55
Type: CAZyme
Location: 65537 - 66160 (+)
Type: CAZyme
Location: 65537 - 66160 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
CAZU01
Species
CAZU01 sp000432275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.