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Cluster: Rep_729_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_729_c_43 Rep_729_c_43_6 3548 4096 + 2.A.21.3.7
pfam Rep_729_c_43 Rep_729_c_43_7 4123 5091 + SSF
CAZyme Rep_729_c_43 Rep_729_c_43_8 5211 7094 + PL33_1
CAZyme Rep_729_c_43 Rep_729_c_43_9 7114 9282 + GH38
CAZyme Rep_729_c_43 Rep_729_c_43_10 9299 10993 - GH29
pfam Rep_729_c_43 Rep_729_c_43_11 11268 12908 + GKRP_SIS_N
NULL(UNKNOWN) Rep_729_c_43 Rep_729_c_43_12 12901 13869 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_729_c_43 Rep_729_c_43_13 14195 15643 + 2.A.21.5.1
pfam Rep_729_c_43 Rep_729_c_43_14 15701 15976 + Trns_repr_metal
TC Rep_729_c_43 Rep_729_c_43_15 16087 17976 + 3.A.3.6.16
Gene ID: Rep_729_c_43_6
Type: TC
Location: 3548 - 4096 (+)
Gene ID: Rep_729_c_43_7
Type: pfam
Location: 4123 - 5091 (+)
Gene ID: Rep_729_c_43_8
Type: CAZyme
Location: 5211 - 7094 (+)
Gene ID: Rep_729_c_43_9
Type: CAZyme
Location: 7114 - 9282 (+)
Gene ID: Rep_729_c_43_10
Type: CAZyme
Location: 9299 - 10993 (-)
Gene ID: Rep_729_c_43_11
Type: pfam
Location: 11268 - 12908 (+)
Gene ID: Rep_729_c_43_12
Type:
Location: 12901 - 13869 (-)
Gene ID: Rep_729_c_43_13
Type: TC
Location: 14195 - 15643 (+)
Gene ID: Rep_729_c_43_14
Type: pfam
Location: 15701 - 15976 (+)
Gene ID: Rep_729_c_43_15
Type: TC
Location: 16087 - 17976 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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