Cluster: Rep_725_CGC19
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_725
- CGC Family ID: CGCFAM_01384
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_725_c_29 | Rep_725_c_29_15 | 17621 | 18772 | + | 2.A.1.26.1 |
| NULL(UNKNOWN) | Rep_725_c_29 | Rep_725_c_29_16 | 18797 | 19753 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_725_c_29 | Rep_725_c_29_17 | 19761 | 20903 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_29 | Rep_725_c_29_18 | 21129 | 23501 | + | GH95 |
| NULL(UNKNOWN) | Rep_725_c_29 | Rep_725_c_29_19 | 23969 | 24298 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_725_c_29 | Rep_725_c_29_20 | 24346 | 24489 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_29 | Rep_725_c_29_21 | 24741 | 26186 | - | GH109 |
| NULL(UNKNOWN) | Rep_725_c_29 | Rep_725_c_29_22 | 26663 | 27271 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_725_c_29 | Rep_725_c_29_23 | 27382 | 28671 | - | 1.I.1.1.3 |
| TC | Rep_725_c_29 | Rep_725_c_29_24 | 29171 | 29779 | - | 4.F.1.1.8 |
| pfam | Rep_725_c_29 | Rep_725_c_29_25 | 29921 | 32305 | - | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | Nlig-Ia |
| CAZyme | Rep_725_c_29 | Rep_725_c_29_26 | 32330 | 33967 | - | GH29 |
Gene ID: Rep_725_c_29_15
Type: TC
Location: 17621 - 18772 (+)
Type: TC
Location: 17621 - 18772 (+)
Gene ID: Rep_725_c_29_16
Type:
Location: 18797 - 19753 (-)
Type:
Location: 18797 - 19753 (-)
Gene ID: Rep_725_c_29_17
Type:
Location: 19761 - 20903 (-)
Type:
Location: 19761 - 20903 (-)
Gene ID: Rep_725_c_29_18
Type: CAZyme
Location: 21129 - 23501 (+)
Type: CAZyme
Location: 21129 - 23501 (+)
Gene ID: Rep_725_c_29_19
Type:
Location: 23969 - 24298 (-)
Type:
Location: 23969 - 24298 (-)
Gene ID: Rep_725_c_29_20
Type:
Location: 24346 - 24489 (-)
Type:
Location: 24346 - 24489 (-)
Gene ID: Rep_725_c_29_21
Type: CAZyme
Location: 24741 - 26186 (-)
Type: CAZyme
Location: 24741 - 26186 (-)
Gene ID: Rep_725_c_29_22
Type:
Location: 26663 - 27271 (-)
Type:
Location: 26663 - 27271 (-)
Gene ID: Rep_725_c_29_23
Type: TC
Location: 27382 - 28671 (-)
Type: TC
Location: 27382 - 28671 (-)
Gene ID: Rep_725_c_29_24
Type: TC
Location: 29171 - 29779 (-)
Type: TC
Location: 29171 - 29779 (-)
Gene ID: Rep_725_c_29_25
Type: pfam
Location: 29921 - 32305 (-)
Type: pfam
Location: 29921 - 32305 (-)
Gene ID: Rep_725_c_29_26
Type: CAZyme
Location: 32330 - 33967 (-)
Type: CAZyme
Location: 32330 - 33967 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.