Cluster: Rep_721_CGC32
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_721
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2395 | 2768078 | 2769202 | - | GT28 |
| TC | Rep_721_c_0 | Rep_721_c_0_2396 | 2769199 | 2770341 | - | 2.A.103.1.1 |
| pfam | Rep_721_c_0 | Rep_721_c_0_2397 | 2770366 | 2771166 | - | LysM | LysM |
| pfam | Rep_721_c_0 | Rep_721_c_0_2398 | 2771144 | 2772499 | - | Mur_ligase_C | Mur_ligase_M | NAD_binding_8 | MurD-like_N |
| TC | Rep_721_c_0 | Rep_721_c_0_2399 | 2772512 | 2773615 | - | 9.B.146.1.3 |
Gene ID: Rep_721_c_0_2395
Type: CAZyme
Location: 2768078 - 2769202 (-)
Type: CAZyme
Location: 2768078 - 2769202 (-)
Gene ID: Rep_721_c_0_2396
Type: TC
Location: 2769199 - 2770341 (-)
Type: TC
Location: 2769199 - 2770341 (-)
Gene ID: Rep_721_c_0_2397
Type: pfam
Location: 2770366 - 2771166 (-)
Type: pfam
Location: 2770366 - 2771166 (-)
Gene ID: Rep_721_c_0_2398
Type: pfam
Location: 2771144 - 2772499 (-)
Type: pfam
Location: 2771144 - 2772499 (-)
Gene ID: Rep_721_c_0_2399
Type: TC
Location: 2772512 - 2773615 (-)
Type: TC
Location: 2772512 - 2773615 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.