Cluster: Rep_721_CGC30
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_721
- CGC Family ID: CGCFAM_02549
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2318 | 2673430 | 2674326 | - | GT11 |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2319 | 2674346 | 2675401 | - | GT2 |
| pfam | Rep_721_c_0 | Rep_721_c_0_2320 | 2675398 | 2676597 | - | Glyco_trans_1_4 |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2321 | 2677004 | 2678080 | + | GT2 |
| peptidase | Rep_721_c_0 | Rep_721_c_0_2322 | 2678158 | 2678721 | - | C56.UNW |
| pfam | Rep_721_c_0 | Rep_721_c_0_2323 | 2678785 | 2679825 | - | Biotin_lipoyl | E3_binding |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2324 | 2679910 | 2681058 | - | CE9 |
| TC | Rep_721_c_0 | Rep_721_c_0_2325 | 2681200 | 2681793 | - | 3.D.1.8.1 |
| NULL(UNKNOWN) | Rep_721_c_0 | Rep_721_c_0_2326 | 2681950 | 2683293 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_721_c_0 | Rep_721_c_0_2327 | 2683298 | 2684815 | - | 2.A.114.1.4 |
Gene ID: Rep_721_c_0_2318
Type: CAZyme
Location: 2673430 - 2674326 (-)
Type: CAZyme
Location: 2673430 - 2674326 (-)
Gene ID: Rep_721_c_0_2319
Type: CAZyme
Location: 2674346 - 2675401 (-)
Type: CAZyme
Location: 2674346 - 2675401 (-)
Gene ID: Rep_721_c_0_2320
Type: pfam
Location: 2675398 - 2676597 (-)
Type: pfam
Location: 2675398 - 2676597 (-)
Gene ID: Rep_721_c_0_2321
Type: CAZyme
Location: 2677004 - 2678080 (+)
Type: CAZyme
Location: 2677004 - 2678080 (+)
Gene ID: Rep_721_c_0_2322
Type: peptidase
Location: 2678158 - 2678721 (-)
Type: peptidase
Location: 2678158 - 2678721 (-)
Gene ID: Rep_721_c_0_2323
Type: pfam
Location: 2678785 - 2679825 (-)
Type: pfam
Location: 2678785 - 2679825 (-)
Gene ID: Rep_721_c_0_2324
Type: CAZyme
Location: 2679910 - 2681058 (-)
Type: CAZyme
Location: 2679910 - 2681058 (-)
Gene ID: Rep_721_c_0_2325
Type: TC
Location: 2681200 - 2681793 (-)
Type: TC
Location: 2681200 - 2681793 (-)
Gene ID: Rep_721_c_0_2326
Type:
Location: 2681950 - 2683293 (-)
Type:
Location: 2681950 - 2683293 (-)
Gene ID: Rep_721_c_0_2327
Type: TC
Location: 2683298 - 2684815 (-)
Type: TC
Location: 2683298 - 2684815 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_721_c_0_2325 | vegetarian > vegan | 1.31465 | 0.00262 |
| Rep_721_c_0_2327 | vegetarian > vegan | 1.21126 | 0.00131 |