Cluster: Rep_721_CGC26
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_721
- CGC Family ID: CGCFAM_01284
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2011 | 2347673 | 2348647 | - | GT8 |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2012 | 2348670 | 2349695 | - | GT2 |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2013 | 2349692 | 2350666 | - | GT9 |
| pfam | Rep_721_c_0 | Rep_721_c_0_2014 | 2350688 | 2351674 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| NULL(UNKNOWN) | Rep_721_c_0 | Rep_721_c_0_2015 | 2351688 | 2351951 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2016 | 2351978 | 2353132 | + | GT2 |
| NULL(UNKNOWN) | Rep_721_c_0 | Rep_721_c_0_2017 | 2353160 | 2353468 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_721_c_0 | Rep_721_c_0_2018 | 2353471 | 2353965 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2019 | 2354301 | 2355692 | + | GT4 |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2020 | 2355813 | 2356811 | + | GT10 |
| TC | Rep_721_c_0 | Rep_721_c_0_2021 | 2356895 | 2358967 | + | 9.B.97.5.1 |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_2022 | 2359127 | 2360158 | + | GT10 |
| NULL(UNKNOWN) | Rep_721_c_0 | Rep_721_c_0_2023 | 2360325 | 2360558 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_721_c_0 | Rep_721_c_0_2024 | 2360682 | 2362547 | - | 2.A.47.4.8 |
Gene ID: Rep_721_c_0_2011
Type: CAZyme
Location: 2347673 - 2348647 (-)
Type: CAZyme
Location: 2347673 - 2348647 (-)
Gene ID: Rep_721_c_0_2012
Type: CAZyme
Location: 2348670 - 2349695 (-)
Type: CAZyme
Location: 2348670 - 2349695 (-)
Gene ID: Rep_721_c_0_2013
Type: CAZyme
Location: 2349692 - 2350666 (-)
Type: CAZyme
Location: 2349692 - 2350666 (-)
Gene ID: Rep_721_c_0_2014
Type: pfam
Location: 2350688 - 2351674 (-)
Type: pfam
Location: 2350688 - 2351674 (-)
Gene ID: Rep_721_c_0_2015
Type:
Location: 2351688 - 2351951 (+)
Type:
Location: 2351688 - 2351951 (+)
Gene ID: Rep_721_c_0_2016
Type: CAZyme
Location: 2351978 - 2353132 (+)
Type: CAZyme
Location: 2351978 - 2353132 (+)
Gene ID: Rep_721_c_0_2017
Type:
Location: 2353160 - 2353468 (+)
Type:
Location: 2353160 - 2353468 (+)
Gene ID: Rep_721_c_0_2018
Type:
Location: 2353471 - 2353965 (+)
Type:
Location: 2353471 - 2353965 (+)
Gene ID: Rep_721_c_0_2019
Type: CAZyme
Location: 2354301 - 2355692 (+)
Type: CAZyme
Location: 2354301 - 2355692 (+)
Gene ID: Rep_721_c_0_2020
Type: CAZyme
Location: 2355813 - 2356811 (+)
Type: CAZyme
Location: 2355813 - 2356811 (+)
Gene ID: Rep_721_c_0_2021
Type: TC
Location: 2356895 - 2358967 (+)
Type: TC
Location: 2356895 - 2358967 (+)
Gene ID: Rep_721_c_0_2022
Type: CAZyme
Location: 2359127 - 2360158 (+)
Type: CAZyme
Location: 2359127 - 2360158 (+)
Gene ID: Rep_721_c_0_2023
Type:
Location: 2360325 - 2360558 (-)
Type:
Location: 2360325 - 2360558 (-)
Gene ID: Rep_721_c_0_2024
Type: TC
Location: 2360682 - 2362547 (-)
Type: TC
Location: 2360682 - 2362547 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_721_c_0_2022 | vegetarian > vegan | 1.00415 | 0.00262 |
| Rep_721_c_0_2023 | vegetarian > omnivore | 1.23406 | 0.01558 |
| Rep_721_c_0_2023 | vegetarian > vegan | 1.65102 | 0.00262 |