Cluster: Rep_721_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_721
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_721_c_0 | Rep_721_c_0_1930 | 2250543 | 2250878 | - | 2.A.7.1.4 |
| NULL(UNKNOWN) | Rep_721_c_0 | Rep_721_c_0_1931 | 2251388 | 2251906 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_1932 | 2251925 | 2253235 | + | GH33 |
| TF | Rep_721_c_0 | Rep_721_c_0_1933 | 2253251 | 2254426 | + | GntR |
| CAZyme | Rep_721_c_0 | Rep_721_c_0_1934 | 2254549 | 2255808 | - | GH33 |
Gene ID: Rep_721_c_0_1930
Type: TC
Location: 2250543 - 2250878 (-)
Type: TC
Location: 2250543 - 2250878 (-)
Gene ID: Rep_721_c_0_1931
Type:
Location: 2251388 - 2251906 (+)
Type:
Location: 2251388 - 2251906 (+)
Gene ID: Rep_721_c_0_1932
Type: CAZyme
Location: 2251925 - 2253235 (+)
Type: CAZyme
Location: 2251925 - 2253235 (+)
Gene ID: Rep_721_c_0_1933
Type: TF
Location: 2253251 - 2254426 (+)
Type: TF
Location: 2253251 - 2254426 (+)
Gene ID: Rep_721_c_0_1934
Type: CAZyme
Location: 2254549 - 2255808 (-)
Type: CAZyme
Location: 2254549 - 2255808 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_721_c_0_1931 | vegetarian > omnivore | 1.21939 | 0.01558 |
| Rep_721_c_0_1931 | vegetarian > vegan | 1.98724 | 0.00262 |
| Rep_721_c_0_1933 | vegetarian > vegan | 1.49198 | 0.00262 |