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Cluster: Rep_625_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_625_c_159 Rep_625_c_159_15 18158 19678 + 3.A.2.1.2
pfam Rep_625_c_159 Rep_625_c_159_16 19699 19971 + ATP-synt_DE_N
TC Rep_625_c_159 Rep_625_c_159_17 19968 21047 + 3.A.2.1.7
TC Rep_625_c_159 Rep_625_c_159_18 21098 21313 + 3.A.2.1.6
pfam Rep_625_c_159 Rep_625_c_159_19 21334 21852 + ATP-synt_B
pfam Rep_625_c_159 Rep_625_c_159_20 21837 22394 + OSCP
TC Rep_625_c_159 Rep_625_c_159_21 22397 23980 + 3.A.2.1.2
TC Rep_625_c_159 Rep_625_c_159_22 23985 24851 + 3.A.2.1.5
CAZyme Rep_625_c_159 Rep_625_c_159_23 25238 26245 + GH130_2
CAZyme Rep_625_c_159 Rep_625_c_159_24 26245 28503 + GH92
CAZyme Rep_625_c_159 Rep_625_c_159_25 28500 32045 + GH125 | GH92
CAZyme Rep_625_c_159 Rep_625_c_159_26 32078 34330 + GH92
Gene ID: Rep_625_c_159_15
Type: TC
Location: 18158 - 19678 (+)
Gene ID: Rep_625_c_159_16
Type: pfam
Location: 19699 - 19971 (+)
Gene ID: Rep_625_c_159_17
Type: TC
Location: 19968 - 21047 (+)
Gene ID: Rep_625_c_159_18
Type: TC
Location: 21098 - 21313 (+)
Gene ID: Rep_625_c_159_19
Type: pfam
Location: 21334 - 21852 (+)
Gene ID: Rep_625_c_159_20
Type: pfam
Location: 21837 - 22394 (+)
Gene ID: Rep_625_c_159_21
Type: TC
Location: 22397 - 23980 (+)
Gene ID: Rep_625_c_159_22
Type: TC
Location: 23985 - 24851 (+)
Gene ID: Rep_625_c_159_23
Type: CAZyme
Location: 25238 - 26245 (+)
Gene ID: Rep_625_c_159_24
Type: CAZyme
Location: 26245 - 28503 (+)
Gene ID: Rep_625_c_159_25
Type: CAZyme
Location: 28500 - 32045 (+)
Gene ID: Rep_625_c_159_26
Type: CAZyme
Location: 32078 - 34330 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_625_c_159_18 vegetarian > omnivore 2.62915 0.04251

🧭 Explore Read Mapping of CGC

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