Cluster: Rep_625_CGC48
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_625
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_625_c_156 | Rep_625_c_156_1 | 72 | 1214 | - | GT4 |
| TF | Rep_625_c_156 | Rep_625_c_156_2 | 1400 | 2080 | + | GerE |
| STP | Rep_625_c_156 | Rep_625_c_156_3 | 2201 | 3193 | + | FecR |
| TC | Rep_625_c_156 | Rep_625_c_156_4 | 3254 | 6664 | + | 1.B.14.6.1 |
Gene ID: Rep_625_c_156_1
Type: CAZyme
Location: 72 - 1214 (-)
Type: CAZyme
Location: 72 - 1214 (-)
Gene ID: Rep_625_c_156_2
Type: TF
Location: 1400 - 2080 (+)
Type: TF
Location: 1400 - 2080 (+)
Gene ID: Rep_625_c_156_3
Type: STP
Location: 2201 - 3193 (+)
Type: STP
Location: 2201 - 3193 (+)
Gene ID: Rep_625_c_156_4
Type: TC
Location: 3254 - 6664 (+)
Type: TC
Location: 3254 - 6664 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.