Cluster: Rep_625_CGC42
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_625
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_143 | Rep_625_c_143_37 | 45443 | 48295 | + | 1.B.14.12.2 |
| pfam | Rep_625_c_143 | Rep_625_c_143_38 | 48485 | 50188 | - | BT_3987-like_N | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_625_c_143 | Rep_625_c_143_39 | 50264 | 51484 | - | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_625_c_143 | Rep_625_c_143_40 | 51506 | 52591 | - | GH18 |
| TC | Rep_625_c_143 | Rep_625_c_143_41 | 52598 | 54208 | - | 8.A.46.2.2 |
| TC | Rep_625_c_143 | Rep_625_c_143_42 | 54227 | 57283 | - | 1.B.14.6.13 |
| CAZyme | Rep_625_c_143 | Rep_625_c_143_43 | 57432 | 59510 | - | GH29 |
| pfam | Rep_625_c_143 | Rep_625_c_143_44 | 59517 | 60626 | - | DUF1573 | HYDIN_VesB_CFA65-like_Ig |
| CAZyme | Rep_625_c_143 | Rep_625_c_143_45 | 60623 | 63832 | - | GH2 |
| CAZyme | Rep_625_c_143 | Rep_625_c_143_46 | 63884 | 66082 | - | GH92 |
| CAZyme | Rep_625_c_143 | Rep_625_c_143_47 | 66098 | 68422 | - | GH3 |
| TC | Rep_625_c_143 | Rep_625_c_143_48 | 68524 | 69951 | - | 2.A.1.1.3 |
Gene ID: Rep_625_c_143_37
Type: TC
Location: 45443 - 48295 (+)
Type: TC
Location: 45443 - 48295 (+)
Gene ID: Rep_625_c_143_38
Type: pfam
Location: 48485 - 50188 (-)
Type: pfam
Location: 48485 - 50188 (-)
Gene ID: Rep_625_c_143_39
Type: pfam
Location: 50264 - 51484 (-)
Type: pfam
Location: 50264 - 51484 (-)
Gene ID: Rep_625_c_143_40
Type: CAZyme
Location: 51506 - 52591 (-)
Type: CAZyme
Location: 51506 - 52591 (-)
Gene ID: Rep_625_c_143_41
Type: TC
Location: 52598 - 54208 (-)
Type: TC
Location: 52598 - 54208 (-)
Gene ID: Rep_625_c_143_42
Type: TC
Location: 54227 - 57283 (-)
Type: TC
Location: 54227 - 57283 (-)
Gene ID: Rep_625_c_143_43
Type: CAZyme
Location: 57432 - 59510 (-)
Type: CAZyme
Location: 57432 - 59510 (-)
Gene ID: Rep_625_c_143_44
Type: pfam
Location: 59517 - 60626 (-)
Type: pfam
Location: 59517 - 60626 (-)
Gene ID: Rep_625_c_143_45
Type: CAZyme
Location: 60623 - 63832 (-)
Type: CAZyme
Location: 60623 - 63832 (-)
Gene ID: Rep_625_c_143_46
Type: CAZyme
Location: 63884 - 66082 (-)
Type: CAZyme
Location: 63884 - 66082 (-)
Gene ID: Rep_625_c_143_47
Type: CAZyme
Location: 66098 - 68422 (-)
Type: CAZyme
Location: 66098 - 68422 (-)
Gene ID: Rep_625_c_143_48
Type: TC
Location: 68524 - 69951 (-)
Type: TC
Location: 68524 - 69951 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.