Cluster: Rep_625_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_625
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_128 | Rep_625_c_128_1 | 2 | 2779 | + | 1.B.14.6.13 |
| TC | Rep_625_c_128 | Rep_625_c_128_2 | 2792 | 4435 | + | 8.A.46.2.2 |
| pfam | Rep_625_c_128 | Rep_625_c_128_3 | 4473 | 5477 | + | GH18_BT1044-like |
| pfam | Rep_625_c_128 | Rep_625_c_128_4 | 5489 | 6790 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_625_c_128 | Rep_625_c_128_5 | 6869 | 8818 | + | GH18 |
| sulfatase | Rep_625_c_128 | Rep_625_c_128_6 | 8960 | 10918 | + | S1_48 |
| TC | Rep_625_c_128 | Rep_625_c_128_7 | 11345 | 12655 | + | 2.A.35.1.5 |
Gene ID: Rep_625_c_128_1
Type: TC
Location: 2 - 2779 (+)
Type: TC
Location: 2 - 2779 (+)
Gene ID: Rep_625_c_128_2
Type: TC
Location: 2792 - 4435 (+)
Type: TC
Location: 2792 - 4435 (+)
Gene ID: Rep_625_c_128_3
Type: pfam
Location: 4473 - 5477 (+)
Type: pfam
Location: 4473 - 5477 (+)
Gene ID: Rep_625_c_128_4
Type: pfam
Location: 5489 - 6790 (+)
Type: pfam
Location: 5489 - 6790 (+)
Gene ID: Rep_625_c_128_5
Type: CAZyme
Location: 6869 - 8818 (+)
Type: CAZyme
Location: 6869 - 8818 (+)
Gene ID: Rep_625_c_128_6
Type: sulfatase
Location: 8960 - 10918 (+)
Type: sulfatase
Location: 8960 - 10918 (+)
Gene ID: Rep_625_c_128_7
Type: TC
Location: 11345 - 12655 (+)
Type: TC
Location: 11345 - 12655 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_625_c_128_7 | vegan > omnivore | 1.59978 | 0.02756 |
| Rep_625_c_128_7 | vegetarian > omnivore | 1.59384 | 0.01619 |