Cluster: Rep_625_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_625
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_625_c_122 | Rep_625_c_122_17 | 19342 | 22380 | - | 1.B.14.6.1 |
| TF | Rep_625_c_122 | Rep_625_c_122_18 | 22591 | 25335 | - | HTH_AraC |
| CAZyme | Rep_625_c_122 | Rep_625_c_122_19 | 25631 | 27487 | + | GH32 |
| TC | Rep_625_c_122 | Rep_625_c_122_20 | 27492 | 28670 | + | 2.A.1.7.17 |
Gene ID: Rep_625_c_122_17
Type: TC
Location: 19342 - 22380 (-)
Type: TC
Location: 19342 - 22380 (-)
Gene ID: Rep_625_c_122_18
Type: TF
Location: 22591 - 25335 (-)
Type: TF
Location: 22591 - 25335 (-)
Gene ID: Rep_625_c_122_19
Type: CAZyme
Location: 25631 - 27487 (+)
Type: CAZyme
Location: 25631 - 27487 (+)
Gene ID: Rep_625_c_122_20
Type: TC
Location: 27492 - 28670 (+)
Type: TC
Location: 27492 - 28670 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.