Cluster: Rep_623_CGC26
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_623
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_623_c_52 | Rep_623_c_52_30 | 32789 | 36112 | + | 1.B.14.6.13 |
| TC | Rep_623_c_52 | Rep_623_c_52_31 | 36164 | 37747 | + | 8.A.46.2.2 |
| CAZyme | Rep_623_c_52 | Rep_623_c_52_32 | 37779 | 38741 | + | GH18 |
Gene ID: Rep_623_c_52_30
Type: TC
Location: 32789 - 36112 (+)
Type: TC
Location: 32789 - 36112 (+)
Gene ID: Rep_623_c_52_31
Type: TC
Location: 36164 - 37747 (+)
Type: TC
Location: 36164 - 37747 (+)
Gene ID: Rep_623_c_52_32
Type: CAZyme
Location: 37779 - 38741 (+)
Type: CAZyme
Location: 37779 - 38741 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes stercorigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_623_c_52_30 | vegan > omnivore | 2.07160 | 0.00181 |
| Rep_623_c_52_30 | vegetarian > omnivore | 1.60286 | 0.01520 |
| Rep_623_c_52_31 | vegan > omnivore | 2.37452 | 0.00181 |
| Rep_623_c_52_31 | vegetarian > omnivore | 1.86255 | 0.01520 |