Cluster: Rep_623_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_623
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_623_c_21 | Rep_623_c_21_40 | 43598 | 46276 | - | GH92 |
| CAZyme | Rep_623_c_21 | Rep_623_c_21_41 | 46291 | 47472 | - | GH76 |
| sulfatase | Rep_623_c_21 | Rep_623_c_21_42 | 47497 | 48477 | - | S1_48 |
| pfam | Rep_623_c_21 | Rep_623_c_21_43 | 48464 | 50005 | - | SusD_RagB | SusD-like_2 | SusD-like_3 |
| TC | Rep_623_c_21 | Rep_623_c_21_44 | 50013 | 52970 | - | 1.B.14.6.1 |
Gene ID: Rep_623_c_21_40
Type: CAZyme
Location: 43598 - 46276 (-)
Type: CAZyme
Location: 43598 - 46276 (-)
Gene ID: Rep_623_c_21_41
Type: CAZyme
Location: 46291 - 47472 (-)
Type: CAZyme
Location: 46291 - 47472 (-)
Gene ID: Rep_623_c_21_42
Type: sulfatase
Location: 47497 - 48477 (-)
Type: sulfatase
Location: 47497 - 48477 (-)
Gene ID: Rep_623_c_21_43
Type: pfam
Location: 48464 - 50005 (-)
Type: pfam
Location: 48464 - 50005 (-)
Gene ID: Rep_623_c_21_44
Type: TC
Location: 50013 - 52970 (-)
Type: TC
Location: 50013 - 52970 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes stercorigallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_623_c_21_43 | vegan > omnivore | 12.82670 | 0.00181 |
| Rep_623_c_21_43 | vegetarian > omnivore | 15.64590 | 0.01332 |
| Rep_623_c_21_43 | vegetarian > vegan | 2.81920 | 0.01287 |
| Rep_623_c_21_44 | vegan > omnivore | 5.74647 | 0.01870 |
| Rep_623_c_21_44 | vegetarian > omnivore | 8.74566 | 0.01520 |
| Rep_623_c_21_44 | vegetarian > vegan | 2.99920 | 0.01287 |