Cluster: Rep_621_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_621
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_19 | Rep_621_c_19_8 | 14141 | 17080 | + | CBM32 | GH2 |
| CAZyme | Rep_621_c_19 | Rep_621_c_19_9 | 17088 | 18518 | + | CE20 |
| pfam | Rep_621_c_19 | Rep_621_c_19_10 | 18550 | 19269 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_621_c_19 | Rep_621_c_19_11 | 19289 | 21268 | + | CE20 | CE20 |
| pfam | Rep_621_c_19 | Rep_621_c_19_12 | 21493 | 22308 | + | Reg_prop | Reg_prop |
| TF | Rep_621_c_19 | Rep_621_c_19_13 | 22355 | 25513 | + | HTH_AraC |
| TC | Rep_621_c_19 | Rep_621_c_19_14 | 25623 | 26909 | + | 2.A.1.33.2 |
| sulfatase | Rep_621_c_19 | Rep_621_c_19_15 | 27244 | 28557 | + | S1_71 |
| pfam | Rep_621_c_19 | Rep_621_c_19_16 | 28885 | 30264 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_621_c_19 | Rep_621_c_19_17 | 30294 | 32453 | - | GH92 |
| CAZyme | Rep_621_c_19 | Rep_621_c_19_18 | 32513 | 34837 | - | GH92 |
| CAZyme | Rep_621_c_19 | Rep_621_c_19_19 | 34889 | 37243 | - | GH92 |
| CAZyme | Rep_621_c_19 | Rep_621_c_19_20 | 37253 | 39910 | - | GH38 |
Gene ID: Rep_621_c_19_8
Type: CAZyme
Location: 14141 - 17080 (+)
Type: CAZyme
Location: 14141 - 17080 (+)
Gene ID: Rep_621_c_19_9
Type: CAZyme
Location: 17088 - 18518 (+)
Type: CAZyme
Location: 17088 - 18518 (+)
Gene ID: Rep_621_c_19_10
Type: pfam
Location: 18550 - 19269 (+)
Type: pfam
Location: 18550 - 19269 (+)
Gene ID: Rep_621_c_19_11
Type: CAZyme
Location: 19289 - 21268 (+)
Type: CAZyme
Location: 19289 - 21268 (+)
Gene ID: Rep_621_c_19_12
Type: pfam
Location: 21493 - 22308 (+)
Type: pfam
Location: 21493 - 22308 (+)
Gene ID: Rep_621_c_19_13
Type: TF
Location: 22355 - 25513 (+)
Type: TF
Location: 22355 - 25513 (+)
Gene ID: Rep_621_c_19_14
Type: TC
Location: 25623 - 26909 (+)
Type: TC
Location: 25623 - 26909 (+)
Gene ID: Rep_621_c_19_15
Type: sulfatase
Location: 27244 - 28557 (+)
Type: sulfatase
Location: 27244 - 28557 (+)
Gene ID: Rep_621_c_19_16
Type: pfam
Location: 28885 - 30264 (-)
Type: pfam
Location: 28885 - 30264 (-)
Gene ID: Rep_621_c_19_17
Type: CAZyme
Location: 30294 - 32453 (-)
Type: CAZyme
Location: 30294 - 32453 (-)
Gene ID: Rep_621_c_19_18
Type: CAZyme
Location: 32513 - 34837 (-)
Type: CAZyme
Location: 32513 - 34837 (-)
Gene ID: Rep_621_c_19_19
Type: CAZyme
Location: 34889 - 37243 (-)
Type: CAZyme
Location: 34889 - 37243 (-)
Gene ID: Rep_621_c_19_20
Type: CAZyme
Location: 37253 - 39910 (-)
Type: CAZyme
Location: 37253 - 39910 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_19_15 | vegetarian > vegan | 1.15212 | 0.00688 |
| Rep_621_c_19_16 | omnivore > vegan | 1.05492 | 0.04779 |
| Rep_621_c_19_17 | omnivore > vegan | 1.02127 | 0.03523 |
| Rep_621_c_19_18 | omnivore > vegan | 1.05641 | 0.03486 |
| Rep_621_c_19_20 | omnivore > vegan | 1.11100 | 0.03486 |