Cluster: Rep_621_CGC21
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_621
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_621_c_16 | Rep_621_c_16_29 | 34060 | 37137 | - | 1.B.14.6.1 |
| TF | Rep_621_c_16 | Rep_621_c_16_30 | 37342 | 38319 | + | HTH_AraC |
| pfam | Rep_621_c_16 | Rep_621_c_16_31 | 38474 | 39412 | + | ROK |
| CAZyme | Rep_621_c_16 | Rep_621_c_16_32 | 39476 | 41557 | + | GH2 |
| pfam | Rep_621_c_16 | Rep_621_c_16_33 | 41898 | 43529 | - | Cpn60_TCP1 |
| pfam | Rep_621_c_16 | Rep_621_c_16_34 | 43545 | 43814 | - | Cpn10 |
| TC | Rep_621_c_16 | Rep_621_c_16_35 | 44473 | 45501 | + | 1.A.35.3.2 |
| CAZyme | Rep_621_c_16 | Rep_621_c_16_36 | 45885 | 48155 | + | GT20 |
| CAZyme | Rep_621_c_16 | Rep_621_c_16_37 | 48142 | 49938 | + | GH15 |
| NULL(UNKNOWN) | Rep_621_c_16 | Rep_621_c_16_38 | 49941 | 50267 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_621_c_16 | Rep_621_c_16_39 | 50598 | 51839 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_621_c_16 | Rep_621_c_16_40 | 51890 | 54565 | - | 1.B.14.12.3 |
| pfam | Rep_621_c_16 | Rep_621_c_16_41 | 54913 | 55275 | - | PP_kinase_N |
| CAZyme | Rep_621_c_16 | Rep_621_c_16_42 | 55277 | 56356 | - | GT1 |
| pfam | Rep_621_c_16 | Rep_621_c_16_43 | 56356 | 57111 | - | Metallophos |
| CAZyme | Rep_621_c_16 | Rep_621_c_16_44 | 57467 | 58888 | - | GH29 |
Gene ID: Rep_621_c_16_29
Type: TC
Location: 34060 - 37137 (-)
Type: TC
Location: 34060 - 37137 (-)
Gene ID: Rep_621_c_16_30
Type: TF
Location: 37342 - 38319 (+)
Type: TF
Location: 37342 - 38319 (+)
Gene ID: Rep_621_c_16_31
Type: pfam
Location: 38474 - 39412 (+)
Type: pfam
Location: 38474 - 39412 (+)
Gene ID: Rep_621_c_16_32
Type: CAZyme
Location: 39476 - 41557 (+)
Type: CAZyme
Location: 39476 - 41557 (+)
Gene ID: Rep_621_c_16_33
Type: pfam
Location: 41898 - 43529 (-)
Type: pfam
Location: 41898 - 43529 (-)
Gene ID: Rep_621_c_16_34
Type: pfam
Location: 43545 - 43814 (-)
Type: pfam
Location: 43545 - 43814 (-)
Gene ID: Rep_621_c_16_35
Type: TC
Location: 44473 - 45501 (+)
Type: TC
Location: 44473 - 45501 (+)
Gene ID: Rep_621_c_16_36
Type: CAZyme
Location: 45885 - 48155 (+)
Type: CAZyme
Location: 45885 - 48155 (+)
Gene ID: Rep_621_c_16_37
Type: CAZyme
Location: 48142 - 49938 (+)
Type: CAZyme
Location: 48142 - 49938 (+)
Gene ID: Rep_621_c_16_38
Type:
Location: 49941 - 50267 (+)
Type:
Location: 49941 - 50267 (+)
Gene ID: Rep_621_c_16_39
Type:
Location: 50598 - 51839 (-)
Type:
Location: 50598 - 51839 (-)
Gene ID: Rep_621_c_16_40
Type: TC
Location: 51890 - 54565 (-)
Type: TC
Location: 51890 - 54565 (-)
Gene ID: Rep_621_c_16_41
Type: pfam
Location: 54913 - 55275 (-)
Type: pfam
Location: 54913 - 55275 (-)
Gene ID: Rep_621_c_16_42
Type: CAZyme
Location: 55277 - 56356 (-)
Type: CAZyme
Location: 55277 - 56356 (-)
Gene ID: Rep_621_c_16_43
Type: pfam
Location: 56356 - 57111 (-)
Type: pfam
Location: 56356 - 57111 (-)
Gene ID: Rep_621_c_16_44
Type: CAZyme
Location: 57467 - 58888 (-)
Type: CAZyme
Location: 57467 - 58888 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_16_36 | vegetarian > omnivore | 1.34530 | 0.00701 |
| Rep_621_c_16_37 | vegetarian > omnivore | 1.09697 | 0.00701 |