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Cluster: Rep_621_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_621_c_12 Rep_621_c_12_30 39990 40340 + 3.D.1.8.1
TC Rep_621_c_12 Rep_621_c_12_31 40361 40984 + 3.D.1.3.1
TC Rep_621_c_12 Rep_621_c_12_32 40981 42594 + 3.D.1.5.1
TC Rep_621_c_12 Rep_621_c_12_33 42708 43784 + 3.D.1.5.1
STP Rep_621_c_12 Rep_621_c_12_34 43787 44227 + Fer4 | Fer4
TC Rep_621_c_12 Rep_621_c_12_35 44231 44740 + 3.D.9.1.1
TC Rep_621_c_12 Rep_621_c_12_36 44754 45062 + 3.D.1.2.1
TC Rep_621_c_12 Rep_621_c_12_37 45085 46977 + 3.D.9.1.1
TC Rep_621_c_12 Rep_621_c_12_38 46990 48474 + 3.D.1.2.1
TC Rep_621_c_12 Rep_621_c_12_39 48481 49908 + 3.D.1.2.1
pfam Rep_621_c_12 Rep_621_c_12_40 50074 50559 - DNA_binding_1 | Methyltransf_1N
TC Rep_621_c_12 Rep_621_c_12_41 50570 52705 - 8.A.51.1.1
NULL(UNKNOWN) Rep_621_c_12 Rep_621_c_12_42 52721 53407 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_621_c_12 Rep_621_c_12_43 53421 54428 - GH73
pfam Rep_621_c_12 Rep_621_c_12_44 54503 55108 + DUF4254
CAZyme Rep_621_c_12 Rep_621_c_12_45 55092 56117 + GT9
Gene ID: Rep_621_c_12_30
Type: TC
Location: 39990 - 40340 (+)
Gene ID: Rep_621_c_12_31
Type: TC
Location: 40361 - 40984 (+)
Gene ID: Rep_621_c_12_32
Type: TC
Location: 40981 - 42594 (+)
Gene ID: Rep_621_c_12_33
Type: TC
Location: 42708 - 43784 (+)
Gene ID: Rep_621_c_12_34
Type: STP
Location: 43787 - 44227 (+)
Gene ID: Rep_621_c_12_35
Type: TC
Location: 44231 - 44740 (+)
Gene ID: Rep_621_c_12_36
Type: TC
Location: 44754 - 45062 (+)
Gene ID: Rep_621_c_12_37
Type: TC
Location: 45085 - 46977 (+)
Gene ID: Rep_621_c_12_38
Type: TC
Location: 46990 - 48474 (+)
Gene ID: Rep_621_c_12_39
Type: TC
Location: 48481 - 49908 (+)
Gene ID: Rep_621_c_12_40
Type: pfam
Location: 50074 - 50559 (-)
Gene ID: Rep_621_c_12_41
Type: TC
Location: 50570 - 52705 (-)
Gene ID: Rep_621_c_12_42
Type:
Location: 52721 - 53407 (-)
Gene ID: Rep_621_c_12_43
Type: CAZyme
Location: 53421 - 54428 (-)
Gene ID: Rep_621_c_12_44
Type: pfam
Location: 54503 - 55108 (+)
Gene ID: Rep_621_c_12_45
Type: CAZyme
Location: 55092 - 56117 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_621_c_12_40 vegan > omnivore 1.07253 0.00029
Rep_621_c_12_40 vegetarian > omnivore 1.24983 0.00701

🧭 Explore Read Mapping of CGC

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