Cluster: Rep_621_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_621
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_11 | Rep_621_c_11_75 | 111809 | 113215 | + | GH26 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_76 | 113313 | 115595 | + | GH3 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_77 | 115592 | 116680 | + | GH26 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_78 | 116716 | 117885 | + | GH130_1 |
| TC | Rep_621_c_11 | Rep_621_c_11_79 | 117892 | 119286 | + | 2.A.2.3.6 |
Gene ID: Rep_621_c_11_75
Type: CAZyme
Location: 111809 - 113215 (+)
Type: CAZyme
Location: 111809 - 113215 (+)
Gene ID: Rep_621_c_11_76
Type: CAZyme
Location: 113313 - 115595 (+)
Type: CAZyme
Location: 113313 - 115595 (+)
Gene ID: Rep_621_c_11_77
Type: CAZyme
Location: 115592 - 116680 (+)
Type: CAZyme
Location: 115592 - 116680 (+)
Gene ID: Rep_621_c_11_78
Type: CAZyme
Location: 116716 - 117885 (+)
Type: CAZyme
Location: 116716 - 117885 (+)
Gene ID: Rep_621_c_11_79
Type: TC
Location: 117892 - 119286 (+)
Type: TC
Location: 117892 - 119286 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_11_78 | vegan > omnivore | 1.68021 | 0.00029 |