dbCAN Logo

Cluster: Rep_621_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_621_c_11 Rep_621_c_11_11 11842 12834 + 1.A.13.4.1
pfam Rep_621_c_11 Rep_621_c_11_12 12997 14022 + VWA | BatA | VWA_2
CAZyme Rep_621_c_11 Rep_621_c_11_13 14442 16502 - GH20
pfam Rep_621_c_11 Rep_621_c_11_14 16898 18055 - BT_3987-like_N | Laminin_G_3
CAZyme Rep_621_c_11 Rep_621_c_11_15 18074 19978 - GH18
TC Rep_621_c_11 Rep_621_c_11_16 20001 21557 - 8.A.46.2.2
TC Rep_621_c_11 Rep_621_c_11_17 21570 24929 - 1.B.14.6.13
STP Rep_621_c_11 Rep_621_c_11_18 25051 26052 - FecR
TF Rep_621_c_11 Rep_621_c_11_19 26131 26727 - GerE
TC Rep_621_c_11 Rep_621_c_11_20 27694 29184 + 2.A.1.3.18
Gene ID: Rep_621_c_11_11
Type: TC
Location: 11842 - 12834 (+)
Gene ID: Rep_621_c_11_12
Type: pfam
Location: 12997 - 14022 (+)
Gene ID: Rep_621_c_11_13
Type: CAZyme
Location: 14442 - 16502 (-)
Gene ID: Rep_621_c_11_14
Type: pfam
Location: 16898 - 18055 (-)
Gene ID: Rep_621_c_11_15
Type: CAZyme
Location: 18074 - 19978 (-)
Gene ID: Rep_621_c_11_16
Type: TC
Location: 20001 - 21557 (-)
Gene ID: Rep_621_c_11_17
Type: TC
Location: 21570 - 24929 (-)
Gene ID: Rep_621_c_11_18
Type: STP
Location: 25051 - 26052 (-)
Gene ID: Rep_621_c_11_19
Type: TF
Location: 26131 - 26727 (-)
Gene ID: Rep_621_c_11_20
Type: TC
Location: 27694 - 29184 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_621_c_11_16 omnivore > vegan 1.13916 0.03486

🧭 Explore Read Mapping of CGC

← Back to Cluster List