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Cluster: Rep_618_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_618_c_0 Rep_618_c_0_343 409518 411272 + 3.A.2.3.3
TC Rep_618_c_0 Rep_618_c_0_344 411283 412605 + 3.A.2.3.3
pfam Rep_618_c_0 Rep_618_c_0_345 412612 413220 + ATP-synt_D
TC Rep_618_c_0 Rep_618_c_0_346 413217 415064 + 3.A.2.3.3
pfam Rep_618_c_0 Rep_618_c_0_347 415086 415541 + ATP-synt_C | ATP-synt_C
CAZyme Rep_618_c_0 Rep_618_c_0_348 415729 418935 + GH38
TC Rep_618_c_0 Rep_618_c_0_349 419421 422552 + 1.B.14.6.1
TC Rep_618_c_0 Rep_618_c_0_350 422568 424220 + 8.A.46.1.3
pfam Rep_618_c_0 Rep_618_c_0_351 424248 425372 + SusE
pfam Rep_618_c_0 Rep_618_c_0_352 425388 427529 + SusE | SusE
CAZyme Rep_618_c_0 Rep_618_c_0_353 427594 428805 + GH76
TF Rep_618_c_0 Rep_618_c_0_354 429105 433163 - HTH_AraC
pfam Rep_618_c_0 Rep_618_c_0_355 433440 434159 + Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_618_c_0 Rep_618_c_0_356 434170 435360 + GH76
CAZyme Rep_618_c_0 Rep_618_c_0_357 435395 436951 + GH125
CAZyme Rep_618_c_0 Rep_618_c_0_358 437018 438961 + GH97
Gene ID: Rep_618_c_0_343
Type: TC
Location: 409518 - 411272 (+)
Gene ID: Rep_618_c_0_344
Type: TC
Location: 411283 - 412605 (+)
Gene ID: Rep_618_c_0_345
Type: pfam
Location: 412612 - 413220 (+)
Gene ID: Rep_618_c_0_346
Type: TC
Location: 413217 - 415064 (+)
Gene ID: Rep_618_c_0_347
Type: pfam
Location: 415086 - 415541 (+)
Gene ID: Rep_618_c_0_348
Type: CAZyme
Location: 415729 - 418935 (+)
Gene ID: Rep_618_c_0_349
Type: TC
Location: 419421 - 422552 (+)
Gene ID: Rep_618_c_0_350
Type: TC
Location: 422568 - 424220 (+)
Gene ID: Rep_618_c_0_351
Type: pfam
Location: 424248 - 425372 (+)
Gene ID: Rep_618_c_0_352
Type: pfam
Location: 425388 - 427529 (+)
Gene ID: Rep_618_c_0_353
Type: CAZyme
Location: 427594 - 428805 (+)
Gene ID: Rep_618_c_0_354
Type: TF
Location: 429105 - 433163 (-)
Gene ID: Rep_618_c_0_355
Type: pfam
Location: 433440 - 434159 (+)
Gene ID: Rep_618_c_0_356
Type: CAZyme
Location: 434170 - 435360 (+)
Gene ID: Rep_618_c_0_357
Type: CAZyme
Location: 435395 - 436951 (+)
Gene ID: Rep_618_c_0_358
Type: CAZyme
Location: 437018 - 438961 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_0_348 vegan > omnivore 1.38984 0.00139
Rep_618_c_0_348 vegetarian > omnivore 1.14047 0.00229
Rep_618_c_0_350 vegan > omnivore 1.05245 0.00139
Rep_618_c_0_351 vegetarian > omnivore 1.18405 0.00229
Rep_618_c_0_351 vegan > omnivore 1.84200 0.00139
Rep_618_c_0_352 vegan > omnivore 1.36396 0.00139
Rep_618_c_0_353 vegan > omnivore 1.09132 0.00139
Rep_618_c_0_357 vegetarian > vegan 1.52841 0.00155

🧭 Explore Read Mapping of CGC

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