dbCAN Logo

Cluster: Rep_618_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_618_c_2 Rep_618_c_2_1463 1656441 1658747 - GH20
pfam Rep_618_c_2 Rep_618_c_2_1464 1658832 1660145 - BT_3987-like_N | Laminin_G_3
CAZyme Rep_618_c_2 Rep_618_c_2_1465 1660164 1661294 - GH18
TC Rep_618_c_2 Rep_618_c_2_1466 1661348 1662934 - 8.A.46.2.2
TC Rep_618_c_2 Rep_618_c_2_1467 1662965 1666129 - 1.B.14.6.13
Gene ID: Rep_618_c_2_1463
Type: CAZyme
Location: 1656441 - 1658747 (-)
Gene ID: Rep_618_c_2_1464
Type: pfam
Location: 1658832 - 1660145 (-)
Gene ID: Rep_618_c_2_1465
Type: CAZyme
Location: 1660164 - 1661294 (-)
Gene ID: Rep_618_c_2_1466
Type: TC
Location: 1661348 - 1662934 (-)
Gene ID: Rep_618_c_2_1467
Type: TC
Location: 1662965 - 1666129 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_2_1463 vegan > omnivore 1.61403 0.00139
Rep_618_c_2_1463 vegetarian > omnivore 1.24708 0.00229
Rep_618_c_2_1464 vegan > omnivore 1.94766 0.00139
Rep_618_c_2_1464 vegetarian > omnivore 1.37256 0.00229
Rep_618_c_2_1465 vegan > omnivore 1.70260 0.00139
Rep_618_c_2_1465 vegetarian > omnivore 1.10899 0.00229
Rep_618_c_2_1466 vegan > omnivore 1.73404 0.00139
Rep_618_c_2_1466 vegetarian > omnivore 1.21723 0.00229
Rep_618_c_2_1467 vegetarian > omnivore 1.27234 0.00229
Rep_618_c_2_1467 vegan > omnivore 1.93216 0.00139

🧭 Explore Read Mapping of CGC

← Back to Cluster List