Cluster: Rep_618_CGC36
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_618
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_2 | Rep_618_c_2_958 | 1065779 | 1067758 | - | GH164 |
| pfam | Rep_618_c_2 | Rep_618_c_2_959 | 1067762 | 1068889 | - | Bgal_small_N | LacZ_4 |
| sulfatase | Rep_618_c_2 | Rep_618_c_2_960 | 1069083 | 1070072 | - | S1_8 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_961 | 1070283 | 1072877 | + | GH2 |
| sulfatase | Rep_618_c_2 | Rep_618_c_2_962 | 1072877 | 1074424 | + | S1_34 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_963 | 1074448 | 1077723 | + | GH2 |
| pfam | Rep_618_c_2 | Rep_618_c_2_964 | 1078075 | 1080216 | + | DUF4988 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_965 | 1080596 | 1082905 | - | GT51 |
| peptidase | Rep_618_c_2 | Rep_618_c_2_966 | 1082945 | 1088197 | + | I39.UPW |
| TC | Rep_618_c_2 | Rep_618_c_2_967 | 1088385 | 1089560 | - | 2.A.1.36.3 |
| pfam | Rep_618_c_2 | Rep_618_c_2_968 | 1089557 | 1090576 | - | Flavin_Reduct |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_969 | 1090585 | 1091403 | - | CE1 |
Gene ID: Rep_618_c_2_958
Type: CAZyme
Location: 1065779 - 1067758 (-)
Type: CAZyme
Location: 1065779 - 1067758 (-)
Gene ID: Rep_618_c_2_959
Type: pfam
Location: 1067762 - 1068889 (-)
Type: pfam
Location: 1067762 - 1068889 (-)
Gene ID: Rep_618_c_2_960
Type: sulfatase
Location: 1069083 - 1070072 (-)
Type: sulfatase
Location: 1069083 - 1070072 (-)
Gene ID: Rep_618_c_2_961
Type: CAZyme
Location: 1070283 - 1072877 (+)
Type: CAZyme
Location: 1070283 - 1072877 (+)
Gene ID: Rep_618_c_2_962
Type: sulfatase
Location: 1072877 - 1074424 (+)
Type: sulfatase
Location: 1072877 - 1074424 (+)
Gene ID: Rep_618_c_2_963
Type: CAZyme
Location: 1074448 - 1077723 (+)
Type: CAZyme
Location: 1074448 - 1077723 (+)
Gene ID: Rep_618_c_2_964
Type: pfam
Location: 1078075 - 1080216 (+)
Type: pfam
Location: 1078075 - 1080216 (+)
Gene ID: Rep_618_c_2_965
Type: CAZyme
Location: 1080596 - 1082905 (-)
Type: CAZyme
Location: 1080596 - 1082905 (-)
Gene ID: Rep_618_c_2_966
Type: peptidase
Location: 1082945 - 1088197 (+)
Type: peptidase
Location: 1082945 - 1088197 (+)
Gene ID: Rep_618_c_2_967
Type: TC
Location: 1088385 - 1089560 (-)
Type: TC
Location: 1088385 - 1089560 (-)
Gene ID: Rep_618_c_2_968
Type: pfam
Location: 1089557 - 1090576 (-)
Type: pfam
Location: 1089557 - 1090576 (-)
Gene ID: Rep_618_c_2_969
Type: CAZyme
Location: 1090585 - 1091403 (-)
Type: CAZyme
Location: 1090585 - 1091403 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_2_958 | vegan > omnivore | 1.96117 | 0.00139 |
| Rep_618_c_2_958 | vegetarian > omnivore | 1.48538 | 0.00229 |
| Rep_618_c_2_959 | vegan > omnivore | 1.91313 | 0.00139 |
| Rep_618_c_2_959 | vegetarian > omnivore | 1.71818 | 0.00229 |
| Rep_618_c_2_960 | vegetarian > omnivore | 1.55269 | 0.00229 |
| Rep_618_c_2_960 | vegan > omnivore | 2.02236 | 0.00139 |
| Rep_618_c_2_961 | vegetarian > omnivore | 1.31383 | 0.00229 |
| Rep_618_c_2_961 | vegan > omnivore | 1.84405 | 0.00139 |
| Rep_618_c_2_962 | vegetarian > omnivore | 1.32157 | 0.00229 |
| Rep_618_c_2_962 | vegan > omnivore | 1.78069 | 0.00139 |
| Rep_618_c_2_964 | vegan > omnivore | 1.94833 | 0.00139 |
| Rep_618_c_2_964 | vegetarian > omnivore | 1.44390 | 0.00229 |
| Rep_618_c_2_967 | vegan > omnivore | 2.04218 | 0.00139 |
| Rep_618_c_2_967 | vegetarian > omnivore | 1.22088 | 0.00229 |