Cluster: Rep_618_CGC28
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_618
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_618_c_2 | Rep_618_c_2_385 | 417223 | 419004 | + | 2.A.49.6.3 |
| NULL(UNKNOWN) | Rep_618_c_2 | Rep_618_c_2_386 | 419084 | 419428 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_387 | 419466 | 421463 | - | GH97 |
Gene ID: Rep_618_c_2_385
Type: TC
Location: 417223 - 419004 (+)
Type: TC
Location: 417223 - 419004 (+)
Gene ID: Rep_618_c_2_386
Type:
Location: 419084 - 419428 (+)
Type:
Location: 419084 - 419428 (+)
Gene ID: Rep_618_c_2_387
Type: CAZyme
Location: 419466 - 421463 (-)
Type: CAZyme
Location: 419466 - 421463 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_2_387 | vegan > omnivore | 1.36982 | 0.00139 |