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Cluster: Rep_618_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_618_c_0 Rep_618_c_0_656 797842 801159 + 1.B.14.6.13
TC Rep_618_c_0 Rep_618_c_0_657 801173 802750 + 8.A.46.2.1
CAZyme Rep_618_c_0 Rep_618_c_0_658 802780 803925 + GH18
pfam Rep_618_c_0 Rep_618_c_0_659 803943 805184 + BT_3987-like_N | Laminin_G_3
sulfatase Rep_618_c_0 Rep_618_c_0_660 805291 806865 + S1_11
CAZyme Rep_618_c_0 Rep_618_c_0_661 806862 808208 + GH20
Gene ID: Rep_618_c_0_656
Type: TC
Location: 797842 - 801159 (+)
Gene ID: Rep_618_c_0_657
Type: TC
Location: 801173 - 802750 (+)
Gene ID: Rep_618_c_0_658
Type: CAZyme
Location: 802780 - 803925 (+)
Gene ID: Rep_618_c_0_659
Type: pfam
Location: 803943 - 805184 (+)
Gene ID: Rep_618_c_0_660
Type: sulfatase
Location: 805291 - 806865 (+)
Gene ID: Rep_618_c_0_661
Type: CAZyme
Location: 806862 - 808208 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_0_656 vegan > omnivore 2.12686 0.00139
Rep_618_c_0_656 vegetarian > omnivore 1.06456 0.00229
Rep_618_c_0_657 vegan > omnivore 1.99947 0.00139
Rep_618_c_0_657 vegetarian > omnivore 1.17318 0.00229
Rep_618_c_0_658 vegan > omnivore 1.90084 0.00139
Rep_618_c_0_658 vegetarian > omnivore 1.14777 0.00229
Rep_618_c_0_659 vegetarian > omnivore 1.50671 0.00229
Rep_618_c_0_659 vegan > omnivore 1.96257 0.00139
Rep_618_c_0_660 vegan > omnivore 1.39513 0.00139
Rep_618_c_0_661 vegetarian > omnivore 1.07371 0.00229
Rep_618_c_0_661 vegan > omnivore 1.89267 0.00139

🧭 Explore Read Mapping of CGC

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