Cluster: Rep_618_CGC12
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_618
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_0 | Rep_618_c_0_649 | 787817 | 788908 | - | GH18 |
| TC | Rep_618_c_0 | Rep_618_c_0_650 | 788937 | 790526 | - | 8.A.46.2.2 |
| TC | Rep_618_c_0 | Rep_618_c_0_651 | 790544 | 793897 | - | 1.B.14.6.13 |
Gene ID: Rep_618_c_0_649
Type: CAZyme
Location: 787817 - 788908 (-)
Type: CAZyme
Location: 787817 - 788908 (-)
Gene ID: Rep_618_c_0_650
Type: TC
Location: 788937 - 790526 (-)
Type: TC
Location: 788937 - 790526 (-)
Gene ID: Rep_618_c_0_651
Type: TC
Location: 790544 - 793897 (-)
Type: TC
Location: 790544 - 793897 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_0_649 | vegan > omnivore | 1.79995 | 0.00139 |
| Rep_618_c_0_649 | vegetarian > omnivore | 1.07732 | 0.00229 |
| Rep_618_c_0_650 | vegan > omnivore | 1.98886 | 0.00139 |
| Rep_618_c_0_650 | vegetarian > omnivore | 1.43545 | 0.00229 |
| Rep_618_c_0_651 | vegan > omnivore | 1.90378 | 0.00139 |
| Rep_618_c_0_651 | vegetarian > omnivore | 1.05918 | 0.00229 |