Cluster: Rep_614_CGC23
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_614
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1415 | 1768145 | 1771252 | + | GH2 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1416 | 1771368 | 1772612 | - | Aminotran_1_2 | DegT_DnrJ_EryC1 | DegT_DnrJ_EryC1 |
| TC | Rep_614_c_1 | Rep_614_c_1_1417 | 1772615 | 1773217 | - | 9.B.18.1.3 |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_1418 | 1773224 | 1773727 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1419 | 1773724 | 1774722 | - | GT2 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1420 | 1774752 | 1775495 | - | CE4 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1421 | 1775497 | 1776492 | - | Acetyltransf_6 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1422 | 1776547 | 1777287 | - | Glycos_transf_2 | Glyco_tranf_2_2 | Glyco_tranf_2_3 |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1423 | 1777365 | 1778438 | - | GT4 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1424 | 1778428 | 1779612 | - | Wzy_C |
| NULL(UNKNOWN) | Rep_614_c_1 | Rep_614_c_1_1425 | 1779612 | 1780184 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_614_c_1 | Rep_614_c_1_1426 | 1780168 | 1781250 | - | GT4 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1427 | 1781288 | 1781926 | - | Hexapep | Hexapep_2 |
| TC | Rep_614_c_1 | Rep_614_c_1_1428 | 1781923 | 1783356 | - | 2.A.66.2.6 |
| pfam | Rep_614_c_1 | Rep_614_c_1_1429 | 1783378 | 1784637 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | Rep_614_c_1 | Rep_614_c_1_1430 | 1784662 | 1785636 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | Rep_614_c_1 | Rep_614_c_1_1431 | 1785679 | 1787625 | - | 9.B.18.2.1 |
Gene ID: Rep_614_c_1_1415
Type: CAZyme
Location: 1768145 - 1771252 (+)
Type: CAZyme
Location: 1768145 - 1771252 (+)
Gene ID: Rep_614_c_1_1416
Type: pfam
Location: 1771368 - 1772612 (-)
Type: pfam
Location: 1771368 - 1772612 (-)
Gene ID: Rep_614_c_1_1417
Type: TC
Location: 1772615 - 1773217 (-)
Type: TC
Location: 1772615 - 1773217 (-)
Gene ID: Rep_614_c_1_1418
Type:
Location: 1773224 - 1773727 (-)
Type:
Location: 1773224 - 1773727 (-)
Gene ID: Rep_614_c_1_1419
Type: CAZyme
Location: 1773724 - 1774722 (-)
Type: CAZyme
Location: 1773724 - 1774722 (-)
Gene ID: Rep_614_c_1_1420
Type: CAZyme
Location: 1774752 - 1775495 (-)
Type: CAZyme
Location: 1774752 - 1775495 (-)
Gene ID: Rep_614_c_1_1421
Type: pfam
Location: 1775497 - 1776492 (-)
Type: pfam
Location: 1775497 - 1776492 (-)
Gene ID: Rep_614_c_1_1422
Type: pfam
Location: 1776547 - 1777287 (-)
Type: pfam
Location: 1776547 - 1777287 (-)
Gene ID: Rep_614_c_1_1423
Type: CAZyme
Location: 1777365 - 1778438 (-)
Type: CAZyme
Location: 1777365 - 1778438 (-)
Gene ID: Rep_614_c_1_1424
Type: pfam
Location: 1778428 - 1779612 (-)
Type: pfam
Location: 1778428 - 1779612 (-)
Gene ID: Rep_614_c_1_1425
Type:
Location: 1779612 - 1780184 (-)
Type:
Location: 1779612 - 1780184 (-)
Gene ID: Rep_614_c_1_1426
Type: CAZyme
Location: 1780168 - 1781250 (-)
Type: CAZyme
Location: 1780168 - 1781250 (-)
Gene ID: Rep_614_c_1_1427
Type: pfam
Location: 1781288 - 1781926 (-)
Type: pfam
Location: 1781288 - 1781926 (-)
Gene ID: Rep_614_c_1_1428
Type: TC
Location: 1781923 - 1783356 (-)
Type: TC
Location: 1781923 - 1783356 (-)
Gene ID: Rep_614_c_1_1429
Type: pfam
Location: 1783378 - 1784637 (-)
Type: pfam
Location: 1783378 - 1784637 (-)
Gene ID: Rep_614_c_1_1430
Type: pfam
Location: 1784662 - 1785636 (-)
Type: pfam
Location: 1784662 - 1785636 (-)
Gene ID: Rep_614_c_1_1431
Type: TC
Location: 1785679 - 1787625 (-)
Type: TC
Location: 1785679 - 1787625 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes shahii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.