Cluster: Rep_604_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_604
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_604_c_0 | Rep_604_c_0_149 | 178805 | 180052 | - | 1.A.11.2.5 |
| pfam | Rep_604_c_0 | Rep_604_c_0_150 | 180101 | 180535 | - | P-II |
| CAZyme | Rep_604_c_0 | Rep_604_c_0_151 | 181264 | 183240 | - | GH51_2 |
Gene ID: Rep_604_c_0_149
Type: TC
Location: 178805 - 180052 (-)
Type: TC
Location: 178805 - 180052 (-)
Gene ID: Rep_604_c_0_150
Type: pfam
Location: 180101 - 180535 (-)
Type: pfam
Location: 180101 - 180535 (-)
Gene ID: Rep_604_c_0_151
Type: CAZyme
Location: 181264 - 183240 (-)
Type: CAZyme
Location: 181264 - 183240 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_604_c_0_149 | vegetarian > omnivore | 1.03410 | 0.02174 |
| Rep_604_c_0_149 | vegetarian > vegan | 1.88363 | 0.01287 |
| Rep_604_c_0_150 | vegetarian > vegan | 1.11089 | 0.01287 |