Cluster: Rep_604_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_604
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_604_c_0 | Rep_604_c_0_575 | 682249 | 683064 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_604_c_0 | Rep_604_c_0_576 | 683360 | 683971 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_604_c_0 | Rep_604_c_0_577 | 683977 | 684810 | + | DUF2764 |
| TC | Rep_604_c_0 | Rep_604_c_0_578 | 684822 | 686579 | + | 3.A.2.3.3 |
| TC | Rep_604_c_0 | Rep_604_c_0_579 | 686728 | 687909 | + | 3.A.2.3.3 |
| pfam | Rep_604_c_0 | Rep_604_c_0_580 | 687916 | 688524 | + | ATP-synt_D |
| TC | Rep_604_c_0 | Rep_604_c_0_581 | 688897 | 690378 | + | 3.A.2.3.3 |
Gene ID: Rep_604_c_0_575
Type: CAZyme
Location: 682249 - 683064 (-)
Type: CAZyme
Location: 682249 - 683064 (-)
Gene ID: Rep_604_c_0_576
Type:
Location: 683360 - 683971 (+)
Type:
Location: 683360 - 683971 (+)
Gene ID: Rep_604_c_0_577
Type: pfam
Location: 683977 - 684810 (+)
Type: pfam
Location: 683977 - 684810 (+)
Gene ID: Rep_604_c_0_578
Type: TC
Location: 684822 - 686579 (+)
Type: TC
Location: 684822 - 686579 (+)
Gene ID: Rep_604_c_0_579
Type: TC
Location: 686728 - 687909 (+)
Type: TC
Location: 686728 - 687909 (+)
Gene ID: Rep_604_c_0_580
Type: pfam
Location: 687916 - 688524 (+)
Type: pfam
Location: 687916 - 688524 (+)
Gene ID: Rep_604_c_0_581
Type: TC
Location: 688897 - 690378 (+)
Type: TC
Location: 688897 - 690378 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.