Cluster: Rep_597_CGC6
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_437 | 513995 | 516094 | + | GH20 |
| pfam | Rep_597_c_0 | Rep_597_c_0_438 | 516287 | 517558 | - | MoCF_biosynth | CinA |
| TC | Rep_597_c_0 | Rep_597_c_0_439 | 517855 | 519024 | + | 2.A.1.2.14 |
Gene ID: Rep_597_c_0_437
Type: CAZyme
Location: 513995 - 516094 (+)
Type: CAZyme
Location: 513995 - 516094 (+)
Gene ID: Rep_597_c_0_438
Type: pfam
Location: 516287 - 517558 (-)
Type: pfam
Location: 516287 - 517558 (-)
Gene ID: Rep_597_c_0_439
Type: TC
Location: 517855 - 519024 (+)
Type: TC
Location: 517855 - 519024 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_437 | vegetarian > omnivore | 1.08572 | 0.00250 |