Cluster: Rep_597_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_395 | 471449 | 473032 | - | GH20 |
| pfam | Rep_597_c_0 | Rep_597_c_0_396 | 473330 | 473752 | - | Biotin_lipoyl |
| NULL(UNKNOWN) | Rep_597_c_0 | Rep_597_c_0_397 | 473802 | 474020 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_597_c_0 | Rep_597_c_0_398 | 474023 | 475585 | - | 3.B.1.1.2 |
Gene ID: Rep_597_c_0_395
Type: CAZyme
Location: 471449 - 473032 (-)
Type: CAZyme
Location: 471449 - 473032 (-)
Gene ID: Rep_597_c_0_396
Type: pfam
Location: 473330 - 473752 (-)
Type: pfam
Location: 473330 - 473752 (-)
Gene ID: Rep_597_c_0_397
Type:
Location: 473802 - 474020 (-)
Type:
Location: 473802 - 474020 (-)
Gene ID: Rep_597_c_0_398
Type: TC
Location: 474023 - 475585 (-)
Type: TC
Location: 474023 - 475585 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_395 | vegetarian > omnivore | 1.06860 | 0.00250 |
| Rep_597_c_0_396 | vegetarian > omnivore | 1.30457 | 0.00250 |