Cluster: Rep_597_CGC40
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_597
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_597_c_0 | Rep_597_c_0_2139 | 2610380 | 2612236 | + | GH2 |
| pfam | Rep_597_c_0 | Rep_597_c_0_2140 | 2612657 | 2614609 | - | Toprim | Zn_ribbon_DnaG | DNAG_N | DnaB_bind | Toprim_2 | Toprim_4 |
| TC | Rep_597_c_0 | Rep_597_c_0_2141 | 2614827 | 2615444 | - | 2.A.107.1.1 |
| pfam | Rep_597_c_0 | Rep_597_c_0_2142 | 2615512 | 2617533 | + | Helicase_C | ResIII | UvrB | UvrB_inter |
| pfam | Rep_597_c_0 | Rep_597_c_0_2143 | 2617530 | 2618021 | + | GtrA_DPMS_TM |
| CAZyme | Rep_597_c_0 | Rep_597_c_0_2144 | 2618393 | 2619355 | - | CBM50 |
Gene ID: Rep_597_c_0_2139
Type: CAZyme
Location: 2610380 - 2612236 (+)
Type: CAZyme
Location: 2610380 - 2612236 (+)
Gene ID: Rep_597_c_0_2140
Type: pfam
Location: 2612657 - 2614609 (-)
Type: pfam
Location: 2612657 - 2614609 (-)
Gene ID: Rep_597_c_0_2141
Type: TC
Location: 2614827 - 2615444 (-)
Type: TC
Location: 2614827 - 2615444 (-)
Gene ID: Rep_597_c_0_2142
Type: pfam
Location: 2615512 - 2617533 (+)
Type: pfam
Location: 2615512 - 2617533 (+)
Gene ID: Rep_597_c_0_2143
Type: pfam
Location: 2617530 - 2618021 (+)
Type: pfam
Location: 2617530 - 2618021 (+)
Gene ID: Rep_597_c_0_2144
Type: CAZyme
Location: 2618393 - 2619355 (-)
Type: CAZyme
Location: 2618393 - 2619355 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A ihumii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_597_c_0_2139 | vegetarian > omnivore | 1.59079 | 0.00250 |
| Rep_597_c_0_2141 | vegan > omnivore | 1.06195 | 0.00863 |
| Rep_597_c_0_2141 | vegetarian > omnivore | 1.39773 | 0.00250 |
| Rep_597_c_0_2143 | vegetarian > omnivore | 1.12180 | 0.00250 |
| Rep_597_c_0_2143 | vegetarian > vegan | 1.17805 | 0.01064 |
| Rep_597_c_0_2144 | vegetarian > omnivore | 1.18351 | 0.00250 |